From 4dcf6eef6e0bc97ec1aac6aad2a1548e5f79c651 Mon Sep 17 00:00:00 2001
From: Frederick Muriuki Muriithi
Date: Wed, 11 Mar 2026 14:36:38 -0500
Subject: Set "RUST_BACKTRACE" envvar if loglevel is DEBUG.

---
 scripts/run_qtlreaper.py | 6 +++++-
 1 file changed, 5 insertions(+), 1 deletion(-)

diff --git a/scripts/run_qtlreaper.py b/scripts/run_qtlreaper.py
index 54e5d45..a0c3b22 100644
--- a/scripts/run_qtlreaper.py
+++ b/scripts/run_qtlreaper.py
@@ -1,4 +1,5 @@
 """Script to run rust-qtlreaper and update database with results."""
+import os
 import sys
 import csv
 import time
@@ -152,7 +153,10 @@ def dispatch(args: Namespace) -> int:
                      "--n_permutations", "1000",
                      "--geno", _genofile,
                      "--traits", _traitsfile,
-                     "--main_output", _qtlreaper_main_output)) as _qtlreaper:
+                     "--main_output", _qtlreaper_main_output),
+                    env=({**os.environ, "RUST_BACKTRACE": "full"}
+                         if logger.getEffectiveLevel() == logging.DEBUG
+                         else dict(os.environ))) as _qtlreaper:
                 while _qtlreaper.poll() is None:
                     logger.debug("QTLReaper process running…")
                     time.sleep(1)
-- 
cgit 1.4.1