From 19f24ba8cd4b574c58f84b3cad1a78ebd18f5cdb Mon Sep 17 00:00:00 2001
From: Frederick Muriuki Muriithi
Date: Fri, 21 Mar 2025 14:12:32 -0500
Subject: Bulk Edit: Initialise the bulk-edit upload

* Provide UI for uploading the file
* Provide (partially implemented) endpoint to handle the uploaded
  file.
---
 uploader/phenotypes/views.py                       | 26 +++++++++
 .../templates/phenotypes/bulk-edit-upload.html     | 61 ++++++++++++++++++++++
 uploader/templates/phenotypes/view-dataset.html    |  8 ++-
 3 files changed, 94 insertions(+), 1 deletion(-)
 create mode 100644 uploader/templates/phenotypes/bulk-edit-upload.html

diff --git a/uploader/phenotypes/views.py b/uploader/phenotypes/views.py
index 2f6e926..3d2ff76 100644
--- a/uploader/phenotypes/views.py
+++ b/uploader/phenotypes/views.py
@@ -932,3 +932,29 @@ def edit_download_phenotype_data(# pylint: disable=[unused-argument]
                 mimetype="text/csv",
                 as_attachment=True,
                 download_name=secure_filename(f"{dataset['Name']}_data"))
+
+
+@phenotypesbp.route(
+    "<int:species_id>/populations/<int:population_id>/phenotypes/datasets"
+    "/<int:dataset_id>/edit-upload",
+    methods=["GET", "POST"])
+@require_login
+@with_dataset(
+    species_redirect_uri="species.populations.phenotypes.index",
+    population_redirect_uri="species.populations.phenotypes.select_population",
+    redirect_uri="species.populations.phenotypes.list_datasets")
+def edit_upload_phenotype_data(# pylint: disable=[unused-argument]
+        species: dict,
+        population: dict,
+        dataset: dict,
+        **kwargs
+):
+    if request.method == "GET":
+        return render_template(
+            "phenotypes/bulk-edit-upload.html",
+            species=species,
+            population=population,
+            dataset=dataset,
+            activelink="edit-phenotype")
+
+    return "NOT Implemented: Would do actual edit."
diff --git a/uploader/templates/phenotypes/bulk-edit-upload.html b/uploader/templates/phenotypes/bulk-edit-upload.html
new file mode 100644
index 0000000..926bcf5
--- /dev/null
+++ b/uploader/templates/phenotypes/bulk-edit-upload.html
@@ -0,0 +1,61 @@
+{%extends "phenotypes/base.html"%}
+{%from "flash_messages.html" import flash_all_messages%}
+{%from "macro-table-pagination.html" import table_pagination%}
+{%from "populations/macro-display-population-card.html" import display_population_card%}
+
+{%block title%}Phenotypes{%endblock%}
+
+{%block pagetitle%}Phenotypes{%endblock%}
+
+{%block lvl4_breadcrumbs%}
+<li {%if activelink=="view-dataset"%}
+    class="breadcrumb-item active"
+    {%else%}
+    class="breadcrumb-item"
+    {%endif%}>
+  <a href="{{url_for('species.populations.phenotypes.view_dataset',
+           species_id=species.SpeciesId,
+           population_id=population.Id,
+           dataset_id=dataset.Id)}}">View</a>
+</li>
+{%endblock%}
+
+{%block contents%}
+<div class="row">
+  <p>Upload the edited file you downloaded and edited.</p>
+</div>
+
+<div class="row">
+  <form id="frm-bulk-edit-upload"
+        class="form-horizontal"
+        method="POST"
+        action="{{url_for(
+                'species.populations.phenotypes.edit_upload_phenotype_data',
+                species_id=species.SpeciesId,
+                population_id=population.Id,
+                dataset_id=dataset.Id)}}"
+        enctype="multipart/form-data">
+
+    <div class="form-group row">
+      <label for="file-upload-bulk-edit-upload"
+             class="form-label col-form-label col-sm-2">
+        Edited File</label>
+      <div class="col-sm-10">
+        <input id="file-upload-bulk-edit-upload"
+               name="file_upload_bulk_edit_upload"
+               class="form-control"
+               type="file"
+               required="required" />
+      </div>
+    </div>
+
+    <input type="submit" class="btn btn-primary"
+           value="upload to edit" />
+
+  </form>
+</div>
+{%endblock%}
+
+
+{%block javascript%}
+{%endblock%}
diff --git a/uploader/templates/phenotypes/view-dataset.html b/uploader/templates/phenotypes/view-dataset.html
index e08afc1..21563d6 100644
--- a/uploader/templates/phenotypes/view-dataset.html
+++ b/uploader/templates/phenotypes/view-dataset.html
@@ -216,7 +216,13 @@
                               className: "btn btn-info btn-bulk-edit",
                               titleAttr: "Click to upload edited data you got by clicking the `Bulk Edit (Download Data)` button.",
                               action: (event, dt, node, config) => {
-                                  alert("Not implemented yet!")
+                                  window.location.assign(
+                                      `${window.location.protocol}//` +
+                                          `${window.location.host}` +
+                                          `/species/${species_id}` +
+                                          `/populations/${population_id}` +
+                                          `/phenotypes/datasets/${dataset_id}` +
+                                          `/edit-upload`)
                               }
                           }
                       ]
-- 
cgit v1.2.3