From 14915500dcf7f2a33de535507905e44ceed46e9a Mon Sep 17 00:00:00 2001
From: Frederick Muriuki Muriithi
Date: Thu, 26 Jun 2025 09:54:46 -0500
Subject: BugFix: Logical bug - files have already been "untransposed".

The `read_csv_file_headers` function can read headings from
non-transposed or transposed file, depending on the value of a flag.
The bug was passing the value of the `*_transposed` flag from the
control file, even after any transposed files have been
"untransposed".

This commit passes an explicit `False` value, and adds a comment to
note the fix.
---
 scripts/load_phenotypes_to_db.py | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/scripts/load_phenotypes_to_db.py b/scripts/load_phenotypes_to_db.py
index 80b11af..b0cc7f6 100644
--- a/scripts/load_phenotypes_to_db.py
+++ b/scripts/load_phenotypes_to_db.py
@@ -116,7 +116,7 @@ def __build_dataitems__(
 ):
     _headers = rqtl2.read_csv_file_headers(
         phenofiles[0],
-        control_data[f"{filetype}_transposed"],
+        False, # Any transposed files have been un-transposed by this point
         control_data["sep"],
         control_data["comment.char"])
     _filescontents = (
-- 
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