index
:
gn-uploader
keyring
load-raw-data-no-parsing
main
rewrite-rqtl2-qc
test-resumablejs
update-templates-for-bootstrap
gn-uploader: Data uploader for GeneNetwork
about
summary
refs
log
tree
commit
diff
log msg
author
committer
range
path:
root
/
scripts
Age
Commit message (
Expand
)
Author
11 days
Save 'pheno' errors in redis as they are found.
Frederick Muriuki Muriithi
11 days
Add some phenocovar metadata.
Frederick Muriuki Muriithi
11 days
Save phenocovar errors in redis as they are found.
Frederick Muriuki Muriithi
11 days
Pass the redis connection and fully qualified job id
Frederick Muriuki Muriithi
11 days
Wrap everything in try-catch to handle errors gracefully.
Frederick Muriuki Muriithi
12 days
Fix typo.
Frederick Muriuki Muriithi
12 days
Send logs to STDOUT too.
Frederick Muriuki Muriithi
12 days
Return 0 on completion of QC processing.
Frederick Muriuki Muriithi
12 days
Change from 'pending' to 'started' on entry to script.
Frederick Muriuki Muriithi
2024-11-22
Use gn-libs code for db connection.
Frederick Muriuki Muriithi
2024-10-24
Reduce number of local variables created in function.
Frederick Muriuki Muriithi
2024-10-24
Add `jobid` to extraction directory
Frederick Muriuki Muriithi
2024-10-24
Check pheno, phenose, and phenonum files with logging
Frederick Muriuki Muriithi
2024-10-24
Check phenocovar files with logging
Frederick Muriuki Muriithi
2024-10-24
Fix linting and typing errors.
Frederick Muriuki Muriithi
2024-10-24
Add a `--loglevel` argument to select loglevel in scripts
Frederick Muriuki Muriithi
2024-10-24
Parse entire namespace object rather than individual values.
Frederick Muriuki Muriithi
2024-10-24
Move logger creation to `build_main` function
Frederick Muriuki Muriithi
2024-10-24
Add handler to send log messages to specific Redis list
Frederick Muriuki Muriithi
2024-10-22
Refactor `qc_pheno_file` and reuse it for different file types.
Frederick Muriuki Muriithi
2024-10-22
Check for errors in `pheno` files.
Frederick Muriuki Muriithi
2024-10-21
Check `phenocovar` files for errors.
Frederick Muriuki Muriithi
2024-10-17
Cleanup: Delete all extracted files after processing.
Frederick Muriuki Muriithi
2024-10-17
Leave TODO notes for what needs to be done.
Frederick Muriuki Muriithi
2024-10-17
Fetch samples from database
Frederick Muriuki Muriithi
2024-10-17
Undo transpose for any transposed files
Frederick Muriuki Muriithi
2024-10-17
Pass new arguments to QC function.
Frederick Muriuki Muriithi
2024-10-17
Add `speciesid` and `populationid` arguments to the script.
Frederick Muriuki Muriithi
2024-10-17
Add the working directory argument to the script.
Frederick Muriuki Muriithi
2024-10-17
Extract the R/qtl2 bundle for processing.
Frederick Muriuki Muriithi
2024-10-17
Extract common functions.
Frederick Muriuki Muriithi
2024-10-17
Save errors for each file in lists. Parallelise error checking.
Frederick Muriuki Muriithi
2024-10-17
Rewrite the QC code for R/qtl2
Frederick Muriuki Muriithi
2024-10-14
Initialise background script for running QC on phenotype bundles.
Frederick Muriuki Muriithi
2024-10-14
BugFix: Use provided prefix
Frederick Muriuki Muriithi
2024-10-14
Make addition of arguments independent of each other.
Frederick Muriuki Muriithi
2024-09-09
Enable samples uploads.
Frederick Muriuki Muriithi
2024-09-03
Initialise the populations package and update references.
Frederick Muriuki Muriithi
2024-08-28
Move code handling expression data upload into new module.
Frederick Muriuki Muriithi
2024-08-16
Log out correct parameters.
Frederick Muriuki Muriithi
2024-08-13
Bug: cross reference with NULL cM when "gmap" file is absent
Frederick Muriuki Muriithi
2024-08-12
Rename module: Module contains exceptions classes.
Frederick Muriuki Muriithi
2024-08-08
Fix bugs and pass in logger to functions.
Frederick Muriuki Muriithi
2024-08-06
Pass logger on to inner functions
Frederick Muriuki Muriithi
2024-07-25
Fix typing and linting errors.
Frederick Muriuki Muriithi
2024-07-25
Rename module: qc_app --> uploader
Frederick Muriuki Muriithi
2024-07-05
bug: Return a hashable key, not a dict.
Frederick Muriuki Muriithi
2024-07-02
Call correct method.
Frederick Muriuki Muriithi
2024-07-02
Ensure no duplicated values for the query.
Frederick Muriuki Muriithi
2024-07-01
Check for genotype samples in the database
Frederick Muriuki Muriithi
[next]
