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rewrite-rqtl2-qc
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gn-uploader: Data uploader for GeneNetwork
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2024-02-28
tests: test with just the message - don't include markup
Frederick Muriuki Muriithi
2024-02-28
tests: Update unit tests: remove use of obsoleted functions.
Frederick Muriuki Muriithi
2024-02-28
Remove last vestiges of flask's "instance path" configurations.
Frederick Muriuki Muriithi
2024-02-28
Fix bug: fetch from cursor, not return from cursor.execute(…)
load-raw-data-no-parsing
Frederick Muriuki Muriithi
2024-02-27
Remove use of instance path in configurations.
Frederick Muriuki Muriithi
2024-02-21
Check that samples/cases are consistent
Frederick Muriuki Muriithi
2024-02-21
Pass 'filename' value to error checker function.
Frederick Muriuki Muriithi
2024-02-20
Track filename in the errors
Frederick Muriuki Muriithi
2024-02-20
Generalise fetching of samples/cases/individuals.
Frederick Muriuki Muriithi
2024-02-20
Read samples from geno file.
Frederick Muriuki Muriithi
2024-02-20
Read each file separately
Frederick Muriuki Muriithi
2024-02-20
Stand-alone function to read control file
Frederick Muriuki Muriithi
2024-02-16
Replace genotype codes with values in control file.
Frederick Muriuki Muriithi
2024-02-16
Convert missing value codes to None
Frederick Muriuki Muriithi
2024-02-16
Strip comment lines.
Frederick Muriuki Muriithi
2024-02-16
Read raw text data from a file in the zip bundle
Frederick Muriuki Muriithi
2024-02-16
Documentation: Add section on configurations.
Frederick Muriuki Muriithi
2024-02-15
Filter out NULL values
Frederick Muriuki Muriithi
2024-02-15
Refactor checking for user input errors.
Frederick Muriuki Muriithi
2024-02-15
Only log out information if the check is actually run.
Frederick Muriuki Muriithi
2024-02-15
Verify that the file actually exist
Frederick Muriuki Muriithi
2024-02-15
Provide only the file name, not full path.
Frederick Muriuki Muriithi
2024-02-15
Provide the log messages to the status page.
Frederick Muriuki Muriithi
2024-02-14
Provide endpoint to send data to.
Frederick Muriuki Muriithi
2024-02-14
Extract upload progress indication code
Frederick Muriuki Muriithi
2024-02-13
Add some parallelism to the QC Checks
Frederick Muriuki Muriithi
2024-02-13
Provide nice UI progress indicators.
Frederick Muriuki Muriithi
2024-02-13
Make "FILE_TYPES" part of public interface for module/package.
Frederick Muriuki Muriithi
2024-02-12
Refactor: Use new decimal places checker.
Frederick Muriuki Muriithi
2024-02-12
Build generic decimal places checker.
Frederick Muriuki Muriithi
2024-02-12
Check for errors in the 'phenose' file.
Frederick Muriuki Muriithi
2024-02-12
Check for errors in the 'pheno' file.
Frederick Muriuki Muriithi
2024-02-12
Improve error display for generic errors
Frederick Muriuki Muriithi
2024-02-12
Collect and display errors on 'geno' files in the bundle.
Frederick Muriuki Muriithi
2024-02-12
Add scaffolding for running individual files' QC checks
Frederick Muriuki Muriithi
2024-02-12
UI: Provide QC successful results page
Frederick Muriuki Muriithi
2024-02-12
Extract missing files check to external function
Frederick Muriuki Muriithi
2024-02-12
Retrive and display generic bundle errors
Frederick Muriuki Muriithi
2024-02-12
Raise error if file is missing rather than returning a Union value.
Frederick Muriuki Muriithi
2024-02-12
Provide the key for each file listed in the control file.
Frederick Muriuki Muriithi
2024-02-12
R/qtl2 QC: Set up scaffolding for QC UI
Frederick Muriuki Muriithi
2024-02-12
Provide better error messaging
Frederick Muriuki Muriithi
2024-02-08
Generalise error retrieval: extract common structure
Frederick Muriuki Muriithi
2024-02-08
Use error objects rather than plain tuple values.
Frederick Muriuki Muriithi
2024-02-07
ShortName is optional, remove check and set default
Frederick Muriuki Muriithi
2024-02-07
Prevent infinite redirect.
Frederick Muriuki Muriithi
2024-02-07
Fix error display: setup correct error class
Frederick Muriuki Muriithi
2024-02-07
Set up limits for inputs in UI
Frederick Muriuki Muriithi
2024-02-06
Check that pheno values are numerical and at least 3 decimal places
Frederick Muriuki Muriithi
2024-02-06
Bug: Fix routing issues
Frederick Muriuki Muriithi
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