#! /usr/bin/env guile !# (use-modules (ice-9 getopt-long) (transform triples) (transform schema) (transform special-forms)) (let* ((option-spec '((settings (single-char #\s) (value #t)) (output (single-char #\o) (value #t)) (documentation (single-char #\d) (value #t)))) (options (getopt-long (command-line) option-spec)) (settings (option-ref options 'settings #f)) (output (option-ref options 'output #f)) (documentation (option-ref options 'documentation #f)) (%connection-settings (call-with-input-file settings read))) (with-output-to-file output (lambda () ;; Define all GN ontology in one place. (prefix "dcat:" "") (prefix "dct:" "") (prefix "gn:" "") (prefix "owl:" "") (prefix "gnc:" "") (prefix "gnt:" "") (prefix "obo:" "") (prefix "bfo:" "") (prefix "sdmx-measure:" "") (prefix "skos:" "") (prefix "rdf:" "") (prefix "rdfs:" "") (prefix "xsd:" "") (prefix "qb:" "") (prefix "xkos:" "") (prefix "pubmed:" "") (prefix "schema:" "") (newline) ;; Minimal BFO bridge for GN terms. (triple 'gnc:resource_entity 'a 'owl:Class) (triple 'gnc:resource_entity 'rdfs:label "GeneNetwork resource entity") (triple 'gnc:resource_entity 'rdfs:subClassOf 'bfo:0000001) (triple 'gnc:material_resource 'a 'owl:Class) (triple 'gnc:material_resource 'rdfs:label "GeneNetwork material resource") (triple 'gnc:material_resource 'rdfs:subClassOf 'bfo:0000040) (triple 'gnc:material_resource 'rdfs:subClassOf 'gnc:resource_entity) (triple 'gnc:information_resource 'a 'owl:Class) (triple 'gnc:information_resource 'rdfs:label "GeneNetwork information resource") (triple 'gnc:information_resource 'rdfs:subClassOf 'bfo:0000031) (triple 'gnc:information_resource 'rdfs:subClassOf 'gnc:resource_entity) (triple 'gnc:population_category 'a 'xkos:ClassificationLevel) (triple 'gnc:population_category 'rdfs:label "Population Category") (triple 'gnc:population_category 'skos:inScheme 'gnc:resource_classification_scheme) (triple 'gnc:population_category 'skos:prefLabel "Population Category") (triple 'gnc:population_category 'xkos:depth "3") (triple 'gnc:population_category 'xkos:nextLevel 'gnc:set) (triple 'gnc:population_category 'xkos:previousLevel 'gnc:species) (triple 'gnc:reference_population 'a 'skos:Concept) (triple 'gnc:reference_population 'skos:definition "A genetic population") (triple 'gnc:reference_population 'skos:inScheme 'gnc:population_category) (triple 'gnc:reference_population 'skos:prefLabel "Reference population") (triple 'gnc:resource_classification_scheme 'a 'skos:ConceptScheme) (triple 'gnc:resource_classification_scheme 'skos:definition "A hierarchical classification scheme for organizing GeneNetwork resources by dataset type, resource set (inbredset group), or species.") (triple 'gnc:resource_classification_scheme 'skos:prefLabel "GeneNetwork Resource Classification Scheme") (triple 'gnc:resource_classification_scheme 'xkos:levels 'gnc:population_category) (triple 'gnc:resource_classification_scheme 'xkos:levels 'gnc:set) (triple 'gnc:resource_classification_scheme 'xkos:levels 'gnc:species) (triple 'gnc:resource_classification_scheme 'xkos:levels 'gnc:taxonomic_family) (triple 'gnc:resource_classification_scheme 'xkos:numberOfLevels "4") (triple 'gnc:set 'a 'xkos:ClassificationLevel) (triple 'gnc:set 'skos:definition "A category representing groups of genetically related strains or individuals (inbred sets, recombinant inbred lines, etc.).") (triple 'gnc:set 'skos:inScheme 'gnc:resource_classification_scheme) (triple 'gnc:set 'skos:prefLabel "InbredSet Group") (triple 'gnc:set 'xkos:depth "4") (triple 'gnc:set 'xkos:previousLevel 'gnc:population_category) (triple 'gnc:species 'a 'xkos:ClassificationLevel) (triple 'gnc:species 'skos:definition "A classification level that that associates a given resource to a species in GeneNetwork.") (triple 'gnc:species 'skos:inScheme 'gnc:resource_classification_scheme) (triple 'gnc:species 'skos:prefLabel "Species") (triple 'gnc:species 'xkos:depth "2") (triple 'gnc:species 'xkos:nextLevel 'gnc:population_category) (triple 'gnc:species 'xkos:previousLevel 'gnc:taxonomic_family) (triple 'gnc:taxonomic_family 'a 'xkos:ClassificationLevel) (triple 'gnc:taxonomic_family 'skos:definition "An organizational classification level used in GeneNetwork to group resources into families.") (triple 'gnc:taxonomic_family 'skos:inScheme 'gnc:resource_classification_scheme) (triple 'gnc:taxonomic_family 'skos:prefLabel "Family") (triple 'gnc:taxonomic_family 'xkos:depth "1") (triple 'gnc:taxonomic_family 'xkos:nextLevel 'gnc:species) (triple 'gnc:strain 'a 'owl:Class) (triple 'gnc:strain 'rdfs:subClassOf 'gnc:material_resource) (triple 'gnc:mapping_method 'a 'skos:ConceptScheme) (triple 'gnc:avg_method 'a 'skos:ConceptScheme) (triple 'gnt:assigned_species 'a 'owl:ObjectProperty) (triple 'gnt:assigned_species 'rdfs:domain 'gnc:set) (triple 'gnt:assigned_species 'rdfs:label "These families have been assigned to these species") (triple 'gnt:genetic_type 'a 'owl:DatatypeProperty) (triple 'gnt:genetic_type 'rdfs:domain 'gnc:set) (triple 'gnt:genetic_type 'rdfs:label "has genetic type") (triple 'gnt:genetic_type 'rdfs:range 'xsd:string) (triple 'gnt:genetic_type 'skos:definition "Describes the genetic architecture of a resource set (e.g., intercross, riset).") (triple 'gnt:has_family_order_id 'a 'owl:DatatypeProperty) (triple 'gnt:has_family_order_id 'rdfs:range 'xsd:integer) (triple 'gnt:has_set_code 'a 'owl:DatatypeProperty) (triple 'gnt:has_set_code 'rdfs:domain 'gnc:set) (triple 'gnt:has_set_code 'rdfs:label "has set code") (triple 'gnt:has_set_code 'rdfs:range 'xsd:string) (triple 'gnt:has_set_code 'skos:definition "Provides a unique identifier code for a resource set.") (triple 'gnt:has_species 'a 'owl:ObjectProperty) (triple 'gnt:has_species 'rdf:comment "This resource belongs to this species") (triple 'gnt:has_species 'rdfs:label "belongs to species") (triple 'gnt:has_species 'rdfs:range 'gnc:species) (triple 'gnt:has_strain 'a 'owl:ObjectProperty) (triple 'gnt:has_strain 'rdf:comment "Indicates the group the resources belongs to") (triple 'gnt:has_strain 'rdfs:domain 'gnc:species) (triple 'gnt:has_strain 'rdfs:label "this resource belongs to this strain.") (triple 'gnt:has_strain 'rdfs:range 'gnc:set) (triple 'gnt:has_strain 'schema:domainIncludes 'dcat:Dataset) (triple 'gnt:has_strain 'schema:domainIncludes 'gnc:species) (triple 'gnt:has_strain 'skos:definition "Lists all strains that belong to this resource.") (triple 'gnt:has_taxonomic_family 'a 'owl:ObjectProperty) (triple 'gnt:has_taxonomic_family 'rdfs:label "has family") (triple 'gnt:has_taxonomic_family 'schema:domainIncludes 'gnc:set) (triple 'gnt:has_taxonomic_family 'schema:domainIncludes 'gnc:species) (triple 'gnt:has_taxonomic_family 'skos:definition "Links a species to its taxonomic family") (triple 'gnt:has_uniprot_taxon_id 'a 'owl:ObjectProperty) (triple 'gnt:has_uniprot_taxon_id 'rdfs:label "has uniprot taxonomic id") (triple 'gnt:population_category 'skos:definition "Classification of genetic populations by breeding design and data aggregation.") (triple 'gnt:short_name 'a 'owl:DatatypeProperty) (triple 'gnt:short_name 'rdfs:domain 'gnc:species) (triple 'gnt:short_name 'rdfs:label "has short name") (triple 'gnt:short_name 'skos:definition "The short name of a given resource") (triple 'gnt:uses_mapping_method 'a 'owl:ObjectProperty) (triple 'gnt:uses_mapping_method 'rdfs:comment "The method used to map genetic or experimental data for this resource.") (triple 'gnt:uses_mapping_method 'rdfs:domain 'gnc:set) (triple 'gnt:uses_mapping_method 'rdfs:label "mapping method") (triple 'gnt:uses_mapping_method 'rdfs:range 'gnc:mapping_method) (triple 'gnt:has_reference_population 'a 'owl:ObjectProperty) (triple 'gnt:has_reference_population 'schema:domainIncludes 'gnc:set) (triple 'gnt:has_reference_population 'schema:domainIncludes 'gnc:population_category) (triple 'gnt:has_reference_population 'rdfs:range 'gnc:reference_population) (triple 'gnt:has_population_order_id 'a 'owl:DatatypeProperty) (triple 'gnt:has_population_order_id 'rdfs:domain 'gnc:reference_population) (triple 'gnt:has_population_order_id 'rdfs:range 'xsd:integer) (triple 'gnt:alias 'a 'owl:DatatypeProperty) (triple 'gnt:alias 'rdfs:domain 'gnc:strain) (triple 'gnt:gene 'a 'owl:DatatypeProperty) (triple 'gnt:gene 'rdfs:domain 'gnc:gene_symbol) ;; Describing Datasets (triple 'gnc:molecular_trait 'a 'owl:Class) (triple 'gnc:molecular_trait 'a 'skos:Concept) (triple 'gnc:molecular_trait 'rdfs:label "Molecular Trait. This describes a melecular trait of a given species. We combine the species name and the tissue name in order to differentiate the traits across different inbredset groups.") (triple 'gnc:molecular_trait 'rdfs:subClassOf 'obo:UBERON_0000479) (triple 'gnc:molecular_trait 'rdfs:subClassOf 'gnc:information_resource) (triple 'gnc:molecular_trait_metadata 'a 'owl:Class) (triple 'gnc:molecular_trait_metadata 'rdfs:subClassOf 'gnc:information_resource) (triple 'gnc:gene_chip 'a 'skos:ConceptScheme) (triple 'gnt:has_case_info 'a 'owl:ObjectProperty) (triple 'gnt:has_case_info 'rdfs:comment "Information about the cases used in this platform") (triple 'gnt:has_case_info 'rdfs:domain 'dcat:Dataset) (triple 'gnt:has_case_info 'rdfs:label "About Case") (triple 'gnt:has_citation 'a 'owl:ObjectProperty) (triple 'gnt:has_citation 'rdfs:comment "Citation for this dataset") (triple 'gnt:has_citation 'rdfs:domain 'dcat:Dataset) (triple 'gnt:has_citation 'rdfs:label "Citation") (triple 'gnt:has_contributors 'a 'owl:ObjectProperty) (triple 'gnt:has_contributors 'rdfs:comment "Contributors of this resource") (triple 'gnt:has_contributors 'rdfs:comment "Contributors of this resource") (triple 'gnt:has_contributors 'rdfs:domain 'dcat:Dataset) (triple 'gnt:has_contributors 'rdfs:label "Contributors") (triple 'gnt:has_data_processing_info 'a 'owl:ObjectProperty) (triple 'gnt:has_data_processing_info 'rdfs:comment "Information about how this dataset was processed") (triple 'gnt:has_data_processing_info 'rdfs:domain 'dcat:Dataset) (triple 'gnt:has_data_processing_info 'rdfs:label "About Data Processing") (triple 'gnt:has_experiment_design 'a 'owl:ObjectProperty) (triple 'gnt:has_experiment_design 'rdfs:comment "Experiment Design for this resource") (triple 'gnt:has_experiment_design 'rdfs:domain 'dcat:Dataset) (triple 'gnt:has_experiment_design 'rdfs:label "Experiment Design") (triple 'gnt:has_experiment_design_info 'a 'owl:ObjectProperty) (triple 'gnt:has_experiment_design_info 'rdfs:comment "Information about how the experiment was designed") (triple 'gnt:has_experiment_design_info 'rdfs:domain 'dcat:Dataset) (triple 'gnt:has_experiment_design_info 'rdfs:label "Experiment Design") (triple 'gnt:has_experiment_type 'a 'owl:ObjectProperty) (triple 'gnt:has_experiment_type 'rdfs:comment "Information about the experiment type") (triple 'gnt:has_experiment_type 'rdfs:domain 'dcat:Dataset) (triple 'gnt:has_experiment_type 'rdfs:label "Experiment Type Metadata") (triple 'gnt:has_molecular_trait 'rdf:type 'owl:ObjectProperty) (triple 'gnt:has_molecular_trait 'rdfs:domain 'gnc:set) (triple 'gnt:has_molecular_trait 'rdfs:label "has molecular trait") (triple 'gnt:has_molecular_trait 'rdfs:range 'gnc:molecular_trait) (triple 'gnt:has_phenotype_data 'rdf:type 'owl:ObjectProperty) (triple 'gnt:has_phenotype_data 'rdfs:comment "Associates a resource with its phenotype data.") (triple 'gnt:has_phenotype_data 'rdfs:domain 'gnc:set) (triple 'gnt:has_phenotype_data 'rdfs:label "this resources has this phenotype data.") (triple 'gnt:has_phenotype_data 'rdfs:range 'dcat:Dataset) (triple 'gnt:has_phenotype_data 'rdfs:subPropertyOf 'dct:relation) (triple 'gnt:has_phenotype_trait 'a 'owl:ObjectProperty) (triple 'gnt:has_phenotype_trait 'rdfs:domain 'dcat:Dataset) (triple 'gnt:has_phenotype_trait 'rdfs:range 'gnc:phenotype_trait) (triple 'gnt:has_platform_info 'a 'owl:ObjectProperty) (triple 'gnt:has_platform_info 'rdfs:comment "Information about the platform that was used with this dataset") (triple 'gnt:has_platform_info 'rdfs:domain 'dcat:Dataset) (triple 'gnt:has_platform_info 'rdfs:label "About Platform") (triple 'gnt:has_probeset_data 'rdf:type 'owl:ObjectProperty) (triple 'gnt:has_probeset_data 'rdfs:comment "Associates a resource with this probeset data.") (triple 'gnt:has_probeset_data 'rdfs:domain 'gnc:set) (triple 'gnt:has_probeset_data 'rdfs:label "this resources has this probeset data.") (triple 'gnt:has_probeset_data 'rdfs:range 'gnc:molecular_trait) (triple 'gnt:has_probeset_data 'rdfs:subPropertyOf 'dct:relation) (triple 'gnt:has_samples 'a 'owl:ObjectProperty) (triple 'gnt:has_samples 'rdfs:domain 'dcat:Dataset) (triple 'gnt:has_samples 'rdfs:label "Samples") (triple 'gnt:has_specifics 'a 'owl:ObjectProperty) (triple 'gnt:has_specifics 'rdfs:comment "Has specifics") (triple 'gnt:has_specifics 'rdfs:domain 'dcat:Dataset) (triple 'gnt:has_specifics 'rdfs:label "Specifics") (triple 'gnt:has_summary 'a 'owl:ObjectProperty) (triple 'gnt:has_summary 'rdfs:comment "Summary information about dataset") (triple 'gnt:has_summary 'rdfs:domain 'dcat:Dataset) (triple 'gnt:has_summary 'rdfs:label "Summary") (triple 'gnt:has_tissue_info 'a 'owl:ObjectProperty) (triple 'gnt:has_tissue_info 'rdfs:domain 'dcat:Dataset) (triple 'gnt:has_tissue_info 'rdfs:label "Metadata about Tissue for this resource") (triple 'gnt:uses_genechip 'a 'owl:ObjectProperty) (triple 'gnt:uses_genechip 'rdfs:domain 'dcat:Dataset) (triple 'gnt:uses_genechip 'skos:definition "The Platform this resource uses..") (triple 'gnt:uses_normalization_method 'rdfs:comment "The normalization method used for the molecular traits in this dataset") (triple 'gnt:uses_normalization_method 'rdfs:domain 'dcat:Dataset) (triple 'gnt:uses_normalization_method 'rdfs:label "Averaging method used for the molecular traits in this dataset.") (triple 'gnt:uses_normalization_method 'rdfs:range 'gnc:avg_method) (triple 'gnt:has_probeset 'a 'owl:ObjectProperty) (triple 'gnt:has_probeset 'rdfs:domain 'gnc:molecular_trait_metadata) (triple 'gnt:has_probeset 'rdfs:range 'gnc:probeset) ;; Describing phenotypes (triple 'gnc:phenotype 'a 'owl:Class) (triple 'gnc:phenotype 'a 'skos:Concept) (triple 'gnc:phenotype 'rdfs:label "A phenotype.") (triple 'gnc:phenotype 'rdfs:subClassOf 'gnc:information_resource) (triple 'gnc:phenotype_trait 'a 'owl:Class) (triple 'gnc:phenotype_trait 'a 'skos:Concept) (triple 'gnc:phenotype_trait 'rdfs:label "A phenotype trait.") (triple 'gnc:phenotype_trait 'rdfs:subClassOf 'gnc:information_resource) (triple 'gnt:abbreviation 'a 'owl:DatatypeProperty) (triple 'gnt:abbreviation 'rdfs:domain 'gnc:phenotype) (triple 'gnt:abbreviation 'skos:definition "The abbreviation used for this resource") (triple 'gnt:has_phenotype 'a 'owl:ObjectProperty) (triple 'gnt:has_phenotype 'rdfs:domain 'gnc:phenotype_trait) (triple 'gnt:has_phenotype 'rdfs:range 'gnc:phenotype) (triple 'gnt:additive 'rdfs:domain 'gnc:phenotype) (triple 'gnt:additive 'rdfs:range 'xsd:double) (triple 'gnt:lab_code 'a 'owl:DatatypeProperty) (triple 'gnt:lab_code 'rdfs:domain 'gnc:phenotype) (triple 'gnt:has_lab_code 'a 'owl:DatatypeProperty) (triple 'gnt:has_lab_code 'rdfs:domain 'gnc:phenotype) (triple 'gnt:has_lab_code 'rdfs:subPropertyOf 'gnt:lab_code) (triple 'gnt:locus 'a 'qb:MeasureProperty) (triple 'gnt:locus 'a 'rdf:Property) (triple 'gnt:locus 'rdfs:domain 'gnc:phenotype) (triple 'gnt:locus 'rdfs:range 'rdfs:Literal) (triple 'gnt:locus 'rdfs:subPropertyOf 'sdmx-measure:obsValue) (triple 'gnt:lod_score 'a 'qb:MeasureProperty) (triple 'gnt:lod_score 'a 'rdf:Property) (triple 'gnt:lod_score 'rdfs:domain 'gnc:phenotype) (triple 'gnt:lod_score 'rdfs:label "Peak -logP") (triple 'gnt:lod_score 'rdfs:range 'xsd:double) (triple 'gnt:lod_score 'rdfs:subPropertyOf 'sdmx-measure:obsValue) (triple 'gnt:lod_score 'skos:definition "Statistical measurement assessing the likelihood of genetic linkage between traits or genetic markers.") (triple 'gnt:mean 'a 'qb:MeasureProperty) (triple 'gnt:mean 'a 'rdf:Property) (triple 'gnt:mean 'rdfs:domain 'gnc:phenotype) (triple 'gnt:mean 'rdfs:range 'xsd:double) (triple 'gnt:mean 'rdfs:subPropertyOf 'sdmx-measure:obsValue) (triple 'gnt:se 'a 'qb:MeasureProperty) (triple 'gnt:se 'a 'rdf:Property) (triple 'gnt:se 'rdfs:domain 'gnc:molecular_trait_metadata) (triple 'gnt:se 'rdfs:range 'xsd:double) (triple 'gnt:se 'rdfs:subPropertyOf 'sdmx-measure:obsValue) (triple 'gnt:pvalue 'a 'qb:MeasureProperty) (triple 'gnt:pvalue 'a 'rdf:Property) (triple 'gnt:pvalue 'rdfs:domain 'gnc:molecular_trait_metadata) (triple 'gnt:pvalue 'rdfs:range 'xsd:double) (triple 'gnt:pvalue 'rdfs:subPropertyOf 'sdmx-measure:obsValue) (triple 'gnt:h2 'a 'qb:MeasureProperty) (triple 'gnt:h2 'a 'rdf:Property) (triple 'gnt:h2 'rdfs:domain 'gnc:molecular_trait_metadata) (triple 'gnt:h2 'rdfs:range 'xsd:double) (triple 'gnt:h2 'rdfs:subPropertyOf 'sdmx-measure:obsValue) (triple 'gnt:sequence 'rdfs:domain 'gnc:phenotype) (triple 'gnt:sequence 'rdfs:range 'xsd:integer) (triple 'gnt:submitter 'a 'owl:DatatypeProperty) (triple 'gnt:submitter 'rdfs:domain 'gnc:phenotype) (triple 'gnt:submitter 'skos:definition "A person who submitted this resource to GN") (triple 'gnt:submitter 'skos:definition "A person who submitted this resource to GN") (triple 'gnt:has_phenotype_data 'a 'owl:ObjectProperty) (triple 'gnt:has_phenotype_data 'rdfs:domain 'gnc:set) (triple 'gnt:has_phenotype_data 'skos:definition "This resource has phenotype data.") ;; Genotypes (triple 'gnc:dna_marker 'a 'owl:Class) (triple 'gnc:dna_marker 'a 'skos:Concept) (triple 'gnc:dna_marker 'rdfs:label "A DNA Marker or SNP") (triple 'gnc:dna_marker 'rdfs:subClassOf 'gnc:material_resource) (triple 'gnc:marker 'a 'owl:Class) (triple 'gnc:marker 'rdfs:subClassOf 'gnc:dna_marker) (triple 'gnt:has_genotype_files 'rdfs:label "This resource has these genotype files") (triple 'gnt:has_genotype_files 'rdfs:domain 'dcat:Dataset) (triple 'gnt:has_genotype_data 'rdf:type 'owl:ObjectProperty) (triple 'gnt:has_genotype_data 'rdfs:label "this resources has genotype data.") (triple 'gnt:has_genotype_data 'rdfs:comment "Associates a resource with its genotype data.") (triple 'gnt:has_genotype_data 'rdfs:domain 'gnc:set) (triple 'gnt:has_genotype_data 'rdfs:range 'dcat:Dataset) (triple 'gnt:has_genotype_data 'rdfs:subPropertyOf 'dct:relation) (triple 'gnt:has_marker_count 'rdf:type 'owl:DatatypeProperty) (triple 'gnt:has_marker_count 'rdfs:label "this resources has N number of dna markers/SNPs.") (triple 'gnt:has_marker_count 'rdfs:domain 'dcat:Dataset) (triple 'gnt:has_marker_count 'rdfs:range 'xsd:integer) (triple 'gnt:chr 'a 'qb:MeasureProperty) (triple 'gnt:chr 'a 'rdf:Property) (triple 'gnt:chr 'rdfs:label "Chromosome") (triple 'gnt:chr 'rdfs:domain 'gnc:marker) (triple 'gnt:chr 'rdfs:range 'rdfs:Literal) (triple 'gnt:chr 'rdfs:subPropertyOf 'sdmx-measure:obsValue) (triple 'gnt:chromosome 'a 'owl:DatatypeProperty) (triple 'gnt:chromosome 'rdfs:subPropertyOf 'gnt:chr) (triple 'gnt:chromosome 'rdfs:range 'rdfs:Literal) (triple 'gnt:mb 'rdfs:label "Megabase") (triple 'gnt:mb 'rdfs:domain 'gnc:marker) (triple 'gnt:mb 'rdfs:range 'rdfs:Literal) (triple 'gnt:mb 'rdfs:subPropertyOf 'sdmx-measure:obsValue) (triple 'gnt:sequence 'rdfs:label "Sequence") (triple 'gnt:sequence 'rdfs:domain 'gnc:marker) (triple 'gnt:sequence 'rdfs:range 'rdfs:Literal) (triple 'gnt:sequence 'rdfs:subPropertyOf 'sdmx-measure:obsValue) (triple 'gnt:source 'rdfs:label "Source") (triple 'gnt:source 'rdfs:domain 'gnc:marker) (triple 'gnt:source 'rdfs:range 'rdfs:Literal) (triple 'gnt:source 'rdfs:subPropertyOf 'sdmx-measure:obsValue) (triple 'gnc:nucleotide 'a 'owl:Class) (triple 'gnc:nucleotide 'rdfs:subClassOf 'gnc:material_resource) (triple 'gnt:has_sequence 'a 'owl:DatatypeProperty) (triple 'gnt:has_sequence 'rdfs:domain 'gnc:nucleotide) (triple 'gnt:has_sequence 'rdfs:range 'xsd:string) ;; Probesets (triple 'gnc:probeset 'a 'owl:Class) (triple 'gnc:probeset 'a 'skos:Concept) (triple 'gnc:probeset 'rdfs:label "A probeset") (triple 'gnc:probeset 'rdfs:subClassOf 'gnc:material_resource) (triple 'gnt:has_target_id 'a 'owl:ObjectProperty) (triple 'gnt:has_target_id 'rdfs:label "The target id for this probeset") (triple 'gnt:has_target_id 'rdfs:domain 'gnc:probeset) (triple 'gnt:symbol 'a 'owl:DatatypeProperty) (triple 'gnt:symbol 'rdfs:domain 'gnc:probeset) (triple 'gnt:targets_region 'a 'owl:DatatypeProperty) (triple 'gnt:targets_region 'rdfs:label "The target region") (triple 'gnt:targets_region 'rdfs:domain 'gnc:probeset) (triple 'gnt:mb_mm8 'a 'owl:DatatypeProperty) (triple 'gnt:mb_mm8 'rdfs:domain 'gnc:probeset) (triple 'gnt:mb_mm8 'rdfs:range 'xsd:double) (triple 'gnt:has_specificity 'a 'owl:DatatypeProperty) (triple 'gnt:has_specificity 'rdfs:domain 'gnc:probeset) (triple 'gnt:has_blat_score 'a 'owl:DatatypeProperty) (triple 'gnt:has_blat_score 'rdfs:domain 'gnc:probeset) (triple 'gnt:has_blat_mb_start 'a 'owl:DatatypeProperty) (triple 'gnt:has_blat_mb_start 'rdfs:domain 'gnc:probeset) (triple 'gnt:has_blat_mb_end 'a 'owl:DatatypeProperty) (triple 'gnt:has_blat_mb_end 'rdfs:domain 'gnc:probeset) (triple 'gnt:has_blat_seq 'a 'owl:DatatypeProperty) (triple 'gnt:has_blat_seq 'rdfs:domain 'gnc:probeset) (triple 'gnt:has_target_seq 'a 'owl:DatatypeProperty) (triple 'gnt:has_target_seq 'rdfs:domain 'gnc:probeset) (triple 'gnt:has_homologene_id 'a 'owl:ObjectProperty) (triple 'gnt:has_homologene_id 'rdfs:domain 'gnc:probeset) (triple 'gnt:has_uniprot_id 'a 'owl:ObjectProperty) (triple 'gnt:has_uniprot_id 'rdfs:domain 'gnc:probeset) (triple 'gnt:has_pub_chem_id 'a 'owl:ObjectProperty) (triple 'gnt:has_pub_chem_id 'rdfs:domain 'gnc:probeset) (triple 'gnt:has_kegg_id 'a 'owl:ObjectProperty) (triple 'gnt:has_kegg_id 'rdfs:domain 'gnc:probeset) (triple 'gnt:has_omim_id 'a 'owl:ObjectProperty) (triple 'gnt:has_omim_id 'rdfs:domain 'gnc:probeset) (triple 'gnt:has_chebi_id 'a 'owl:ObjectProperty) (triple 'gnt:has_chebi_id 'rdfs:domain 'gnc:probeset) ;; RIF (triple 'gnc:gene 'a 'rdfs:Class) (triple 'gnc:gene 'rdfs:subClassOf 'gnc:material_resource) (triple 'gnc:gene_symbol 'a 'rdfs:Class) (triple 'gnc:gene_symbol 'rdfs:subClassOf 'gnc:information_resource) (triple 'gnc:transcript 'a 'rdfs:Class) (triple 'gnc:transcript 'rdfs:subClassOf 'gnc:information_resource) (triple 'gnc:resource_link 'a 'rdfs:Class) (triple 'gnc:aba_link 'rdfs:subClassOf 'gnc:resource_link) (triple 'gnc:biogps_link 'rdfs:subClassOf 'gnc:resource_link) (triple 'gnc:ebi_gwas_link 'rdfs:subClassOf 'gnc:resource_link) (triple 'gnc:gemma_link 'rdfs:subClassOf 'gnc:resource_link) (triple 'gnc:genemania_link 'rdfs:subClassOf 'gnc:resource_link) (triple 'gnc:gtex_link 'rdfs:subClassOf 'gnc:resource_link) (triple 'gnc:panther_link 'rdfs:subClassOf 'gnc:resource_link) (triple 'gnc:protein_atlas_link 'rdfs:subClassOf 'gnc:resource_link) (triple 'gnc:rgd_link 'rdfs:subClassOf 'gnc:resource_link) (triple 'gnc:has_kg_id 'a 'owl:DatatypeProperty) (triple 'gnc:has_kg_id 'rdfs:domain 'gnc:gene) (triple 'gnc:has_unigen_id 'a 'owl:DatatypeProperty) (triple 'gnc:has_unigen_id 'rdfs:domain 'gnc:gene) (triple 'gnc:has_protein_id 'a 'owl:DatatypeProperty) (triple 'gnc:has_protein_id 'rdfs:domain 'gnc:gene) (triple 'gnc:has_align_id 'a 'owl:DatatypeProperty) (triple 'gnc:has_align_id 'rdfs:domain 'gnc:gene) (triple 'gnc:gene_wiki_entry 'a 'rdfs:Class) (triple 'gnc:gene_wiki_entry 'rdfs:subClassOf 'gnc:information_resource) (triple 'gnc:gn_wiki_entry 'rdfs:subClassOf 'gnc:gene_wiki_entry) (triple 'gnt:initial 'a 'owl:DatatypeProperty) (triple 'gnt:initial 'rdfs:domain 'gnc:gene_wiki_entry) (triple 'gnt:initial 'skos:definition "Optional user or project code or your initials") (triple 'gnt:reason 'a 'owl:DatatypeProperty) (triple 'gnt:reason 'rdfs:domain 'gnc:gene_wiki_entry) (triple 'gnt:reason 'skos:definition "The reason why this resource was modified") (triple 'gnt:belongs_to_category 'a 'owl:DatatypeProperty) (triple 'gnt:belongs_to_category 'rdfs:domain 'gnc:gene_wiki_entry) (triple 'gnt:has_gene_id 'a 'owl:ObjectProperty) (triple 'gnt:has_gene_id 'schema:domainIncludes 'gnc:gene) (triple 'gnt:has_gene_id 'schema:domainIncludes 'gnc:ncbi_wiki_entry) (triple 'gnt:gene_symbol 'a 'owl:DatatypeProperty) (triple 'gnt:gene_symbol 'rdfs:domain 'gnc:gene) (triple 'gnc:gn_wiki_entry 'rdfs:comment "Represents GeneRIF Entries entered from GeneNetwork") (triple 'gnt:gene_symbol 'rdfs:domain 'gnc:gn_wiki_entry) (triple 'gnt:transcript 'a 'owl:ObjectProperty) (triple 'gnt:transcript 'rdfs:domain 'gnc:gene) (triple 'gnt:transcript 'rdfs:range 'gnc:transcript) (triple 'gnt:strand 'a 'owl:DatatypeProperty) (triple 'gnt:strand 'rdfs:domain 'gnc:gene) (triple 'gnt:strand 'rdfs:range 'xsd:string) (triple 'gnt:tx_start 'a 'owl:DatatypeProperty) (triple 'gnt:tx_start 'rdfs:domain 'gnc:gene) (triple 'gnt:tx_start 'rdfs:range 'xsd:double) (triple 'gnt:tx_end 'a 'owl:DatatypeProperty) (triple 'gnt:tx_end 'rdfs:domain 'gnc:gene) (triple 'gnt:tx_end 'rdfs:range 'xsd:double) (triple 'gnt:has_align_id 'a 'owl:DatatypeProperty) (triple 'gnt:has_align_id 'rdfs:domain 'gnc:gene) (triple 'gnt:has_protein_id 'a 'owl:DatatypeProperty) (triple 'gnt:has_protein_id 'rdfs:domain 'gnc:gene) (triple 'gnt:has_rgd_id 'a 'owl:DatatypeProperty) (triple 'gnt:has_rgd_id 'rdfs:domain 'gnc:gene) (triple 'gnt:has_geo_series_id 'a 'owl:ObjectProperty) (triple 'gnt:has_geo_series_id 'rdfs:domain 'skos:Concept) (triple 'gnt:has_go_tree_value 'a 'owl:DatatypeProperty) (triple 'gnt:has_go_tree_value 'rdfs:domain 'skos:Concept) (triple 'gnt:has_go_tree_value 'rdfs:range 'xsd:string) (triple 'gnc:ncbi_wiki_entry 'rdfs:subClassOf 'gnc:gene_wiki_entry) (triple 'gnc:ncbi_wiki_entry 'rdfs:comment "Represents GeneRIF Entries obtained from NCBI"))))