From 24226aeafadfeb81a01ae6105f078dd319965887 Mon Sep 17 00:00:00 2001
From: Munyoki Kilyungi
Date: Mon, 28 Aug 2023 14:33:45 +0300
Subject: Update how generif metadata is dumped

Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
---
 examples/generif.scm | 10 ++++------
 1 file changed, 4 insertions(+), 6 deletions(-)

(limited to 'examples/generif.scm')

diff --git a/examples/generif.scm b/examples/generif.scm
index 8058b37..a5930ad 100755
--- a/examples/generif.scm
+++ b/examples/generif.scm
@@ -46,13 +46,11 @@
            (left-join Species "USING (SpeciesId)"))
           "GROUP BY GeneId ORDER BY BINARY symbol")
   (schema-triples
-   (gnt:belongsToSpecies rdfs:domain gnc:strain)
-   (gnt:belongsToSpecies rdfs:domain gnc:NCBIWikiEntry)
    (gnt:symbol rdfs:domain gnc:NCBIWikiEntry))
   (triples (ontology 'generif: (field GeneRIF_BASIC GeneId))
     (multiset gnt:symbol (string-split (field ("GROUP_CONCAT(DISTINCT symbol)" symbol))
                                        #\,))
-    (multiset gnt:belongsToSpecies
+    (multiset xkos:classifiedUnder
               (string-split
                (field ("GROUP_CONCAT(DISTINCT Species.SpeciesName)" species))
                #\,))
@@ -73,8 +71,6 @@
    (gnc:GeneWikiEntry a rdfs:Class)
    (gnc:GNWikiEntry rdfs:subClassOf gnc:GeneWikiEntry)
    (gnc:GNWikiEntry rdfs:comment "Represents GeneRIF Entries entered from GeneNetwork")
-   (gnt:belongsToCategory rdfs:domain gnc:GNWikiEntry)
-   (gnt:belongsToSpecies rdfs:domain gnc:GNWikiEntry)
    (gnt:symbol rdfs:domain gnc:GNWikiEntry))
   (triples
     (string->identifier
@@ -99,7 +95,7 @@
                 (field ("GROUP_CONCAT(DISTINCT GeneCategory.Name SEPARATOR '$$')"
                         GeneCategory))
                 "$$")))
-    (set gnt:belongsToSpecies
+    (set xkos:classifiedUnder
          (string->identifier
           ""
           (remap-species-identifiers (field Species Fullname))
@@ -201,6 +197,8 @@
    (prefixes
     '(("rdf:" "<http://www.w3.org/1999/02/22-rdf-syntax-ns#>")
       ("rdfs:" "<http://www.w3.org/2000/01/rdf-schema#>")
+      ("skos:" "<http://www.w3.org/2004/02/skos/core#>")
+      ("xkos:" "<http://rdf-vocabulary.ddialliance.org/xkos#>")
       ("gn:" "<http://genenetwork.org/id/>")
       ("gnc:" "<http://genenetwork.org/category/>")
       ("gnt:" "<http://genenetwork.org/term/>")
-- 
cgit v1.2.3