From e4956fca2d4ad179856f50d14d1912b25df1f7f9 Mon Sep 17 00:00:00 2001
From: Munyoki Kilyungi
Date: Mon, 28 Aug 2023 12:48:57 +0300
Subject: Replace gnt:belongsToSpecies/Set with xkos:classifiedUnder

Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
---
 examples/dataset-metadata.scm | 17 ++++++-----------
 1 file changed, 6 insertions(+), 11 deletions(-)

(limited to 'examples/dataset-metadata.scm')

diff --git a/examples/dataset-metadata.scm b/examples/dataset-metadata.scm
index 4cec27b..0b869b9 100755
--- a/examples/dataset-metadata.scm
+++ b/examples/dataset-metadata.scm
@@ -69,9 +69,6 @@
     skos:description
     "This is a set of controlled terms that are used to describe a given gene chip/platform")
    (gnt:hasGeoSeriesId rdfs:domain gnc:platform)
-   (gnt:belongsToSpecies a owl:ObjectProperty)
-   (gnt:belongsToSpecies skos:definition "This resource belongs to this given species")
-   (gnt:belongsToSpecies rdfs:domain gnc:geneChip)
    (gnt:hasGeoSeriesId rdfs:domain gnc:geneChip)
    (gnt:hasGOTreeValue a owl:ObjectProperty)
    (gnt:hasGOTreeValue skos:definition "This resource the following GO tree value")
@@ -83,7 +80,7 @@
     (set skos:altLabel (field ("IF(GeneChip.GeneChipName != GeneChip.Title, Title, NULL)"
                                Title)))
     (set gnt:hasGOTreeValue (field GeneChip Go_tree_value))
-    (set gnt:belongsToSpecies
+    (set xkos:classifiedUnder
          (string->identifier "" (remap-species-identifiers (field Species Fullname))
                              #:separator ""
                              #:proc string-capitalize-first))
@@ -117,9 +114,6 @@
    (gnc:genotypeDataset rdfs:subClassOf gnc:dataset)
    (gnc:phenotypeDataset rdfs:subClassOf gnc:dataset)
    (gnc:probesetDataset rdfs:subClassOf gnc:dataset)
-   (gnt:belongsToSet rdfs:domain gnc:dataset)
-   (gnt:belongsToSet a owl:ObjectProperty)
-   (gnt:belongsToSet skos:definition "The InbredSet this resource belongs to")
    (gnt:hasTissue rdfs:domain gnc:dataset)
    (gnt:hasTissue a owl:ObjectProperty)
    (gnt:hasTissue skos:definition "Tissues this resource has")
@@ -203,7 +197,7 @@
     (set dct:identifier (format #f "GN~a" (field InfoFiles GN_AccesionId)))
     (set dct:accessRights (string-downcase
                             (field DatasetStatus DatasetStatusName)))
-    (set gnt:belongsToSet
+    (set xkos:classifiedUnder
          (string->identifier
           "set" (field InbredSet Name)
           #:separator ""
@@ -278,7 +272,7 @@
     (set dct:created (annotate-field
                       (field PublishFreeze CreateTime)
                       '^^xsd:date))
-    (set gnt:belongsToSet
+    (set xkos:classifiedUnder
          (string->identifier
           "set" (field InbredSet Name)
           #:separator ""
@@ -308,7 +302,7 @@
     (set dct:created (annotate-field
                       (field GenoFreeze CreateTime)
                       '^^xsd:date))
-    (set gnt:belongsToSet
+    (set xkos:classifiedUnder
          (string->identifier
             "set" (field InbredSet Name)
             #:separator ""
@@ -355,7 +349,7 @@
          (string->identifier
           "tissue"
           (field Tissue Short_Name)))
-    (set gnt:belongsToSet
+    (set xkos:classifiedUnder
          (string->identifier
           "set" (field InbredSet Name)
           #:separator ""
@@ -383,6 +377,7 @@
       ("foaf:" "<http://xmlns.com/foaf/0.1/>")
       ("dcat:" "<http://www.w3.org/ns/dcat#>")
       ("skos:" "<http://www.w3.org/2004/02/skos/core#>")
+      ("xkos:" "<http://rdf-vocabulary.ddialliance.org/xkos#>")
       ("geoSeries:" "<http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=>")
       ("gnt:" "<http://genenetwork.org/term/>")
       ("gn:" "<http://genenetwork.org/id/>")
-- 
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