From 91845d31ef4dd291bef12fa6f9a2755285de4739 Mon Sep 17 00:00:00 2001
From: Munyoki Kilyungi
Date: Fri, 25 Aug 2023 14:47:03 +0300
Subject: Replace gdmt: with dcat:

Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
---
 examples/dataset-metadata.scm | 48 ++++++++++++++++++++++++++-----------------
 1 file changed, 29 insertions(+), 19 deletions(-)

(limited to 'examples/dataset-metadata.scm')

diff --git a/examples/dataset-metadata.scm b/examples/dataset-metadata.scm
index 542f465..4cec27b 100755
--- a/examples/dataset-metadata.scm
+++ b/examples/dataset-metadata.scm
@@ -107,7 +107,13 @@
            (left-join GeneChip "USING (GeneChipId)"))
           "WHERE GN_AccesionId IS NOT NULL")
   (schema-triples
-   (gnc:dataset rdf:type gdmt:Dataset)
+   (gnc:dataset rdf:type dcat:Dataset)
+   (gn:datasetTitle a rdfs:Datatype)
+   (gn:datasetTitle rdfs:comment "The Dataset's Title")
+   (gn:datasetTitle owl:onDatatype xsd:string)
+   (gn:publicationTitle a rdfs:Datatype)
+   (gn:publicationTitle rdfs:comment "The Dataset's Publication Title")
+   (gn:publicationTitle owl:onDatatype xsd:string)
    (gnc:genotypeDataset rdfs:subClassOf gnc:dataset)
    (gnc:phenotypeDataset rdfs:subClassOf gnc:dataset)
    (gnc:probesetDataset rdfs:subClassOf gnc:dataset)
@@ -170,29 +176,33 @@
          (field ("IFNULL(GenoFreeze.FullName, IFNULL(PublishFreeze.FullName, ''))"
                  DatasetFullName)))
     (set skos:prefLabel (field Datasets DatasetName DatasetGroup))
-    (set gdmt:hasTitleInfo
-         (regexp-substitute/global
-          #f "^[Nn]one$"
-          (field InfoFiles InfoFileTitle)
-          ""))
+    (set dct:title
+         (annotate-field
+          (regexp-substitute/global
+           #f "^[Nn]one$"
+           (field InfoFiles InfoFileTitle)
+           ""))
+         '^^gn:datasetTitle)
     ;; This is the published title
     (set dct:title
-         (regexp-substitute/global
-          #f "^[Nn]one$"
-          (field Datasets PublicationTitle)
-          ""))
+         (annotate-field
+          (regexp-substitute/global
+           #f "^[Nn]one$"
+           (field Datasets PublicationTitle)
+           ""))
+         '^^gn:publicationTitle)
     (set dct:created
          (field ("IFNULL(GenoFreeze.CreateTime, IFNULL(PublishFreeze.CreateTime, IFNULL(ProbeSetFreeze.CreateTime, '')))"
                  createTimeGenoFreeze)))
-    (set gdmt:hasCreatorInfo
+    (set dcat:contacttPoint
          (investigator-attributes->id (field Investigators FirstName)
                                       (field Investigators LastName)
                                       (field Investigators Email)))
-    (set gdmt:hasCreatorAffiliation
+    (set foaf:Organization
          (field Organizations OrganizationName))
-    (set gdmt:hasDatasetIdentifierSubType (format #f "GN~a" (field InfoFiles GN_AccesionId)))
-    (set gdmt:hasRightsInfo (string-downcase
-                             (field DatasetStatus DatasetStatusName)))
+    (set dct:identifier (format #f "GN~a" (field InfoFiles GN_AccesionId)))
+    (set dct:accessRights (string-downcase
+                            (field DatasetStatus DatasetStatusName)))
     (set gnt:belongsToSet
          (string->identifier
           "set" (field InbredSet Name)
@@ -208,7 +218,7 @@
     (set gnt:usesPlatform
          (string->identifier "platform"
                              (field GeneChip Name GeneChip)))
-    (set gdmt:isDescribedBy
+    (set dct:description
          (sanitize-rdf-string (field Datasets Summary)))
     (set gnt:hasGeoSeriesId
          (let ((s
@@ -235,10 +245,10 @@
     (set gnt:hasExperimentDesignInfo
          (sanitize-rdf-string
           (field Datasets ExperimentDesign)))
-    (set gdmt:hasContributorInfo
+    (set dct:creator
          (sanitize-rdf-string
           (field Datasets Contributors)))
-    (set gdmt:IsCitedBy
+    (set dct:isReferencedBy
          (sanitize-rdf-string
           (regexp-substitute/global
            #f "^[Nn]one$"
@@ -371,7 +381,7 @@
    (prefixes
     '(("v:" "<http://www.w3.org/2006/vcard/ns#>")
       ("foaf:" "<http://xmlns.com/foaf/0.1/>")
-      ("gdmt:" "<http://vocab.fairdatacollective.org/gdmt/>")
+      ("dcat:" "<http://www.w3.org/ns/dcat#>")
       ("skos:" "<http://www.w3.org/2004/02/skos/core#>")
       ("geoSeries:" "<http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=>")
       ("gnt:" "<http://genenetwork.org/term/>")
-- 
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