From 8e1e4cceab516afab46ccced63ca9edab663ca11 Mon Sep 17 00:00:00 2001 From: Munyoki Kilyungi Date: Mon, 21 Aug 2023 15:03:20 +0300 Subject: Rename dump -> transform Signed-off-by: Munyoki Kilyungi --- dump/triples.scm | 110 ------------------------------------------------------- 1 file changed, 110 deletions(-) delete mode 100644 dump/triples.scm (limited to 'dump/triples.scm') diff --git a/dump/triples.scm b/dump/triples.scm deleted file mode 100644 index b0eb1e4..0000000 --- a/dump/triples.scm +++ /dev/null @@ -1,110 +0,0 @@ -(define-module (dump triples) - #:use-module (ice-9 regex) - #:use-module (ice-9 match) - #:use-module (dump strings) - #:export (ontology - string->identifier - prefix - triple - scm->triples - annotate-field - string->binomial-name)) - -(define (annotate-field field schema) - (let ([schema (cond ((symbol? schema) - (symbol->string schema)) - ((string? schema) schema) - (else - (error "Use a string/symbol")))] - [string-field (if (number? field) (number->string field) field)]) - (if (or (and (string? string-field) (string-null? string-field)) - (eq? string-field #f)) - "" - (string->symbol - (format #f "~s~a" string-field schema))))) - -(define* (string->identifier prefix str - #:optional #:key - (ontology "gn:") - (separator "_") - (proc string-downcase)) - "Convert STR to a turtle identifier after replacing illegal -characters with an underscore and prefixing with gn:PREFIX." - (if (or (and (string? str) (string-null? str)) - (eq? str #f)) - "" - (string->symbol - (string-append ontology prefix separator - (string-delete - (lambda (c) - (eq? c #\))) - (string-map (lambda (c) - (case c - ((#\/ #\< #\> #\+ #\( #\space #\@) #\_) - (else c))) - (proc - (string-trim-right str #\.)))))))) - - -(define* (prefix prefix iri #:optional (ttl? #t)) - (format #t - (if ttl? - "@prefix ~a ~a .~%" - "PREFIX ~a ~a ~%") - prefix iri)) - -(define (ontology prefix value) - (if (and (string? value) (string-null? value)) - "" - (string->symbol - `,(format #f "~a~a" prefix value)))) - -(define (triple subject predicate object) - (unless (or (string? subject) - (symbol? subject)) - (error "Triple subject not a string or symbol:" - (list subject predicate object))) - (unless (or (string? predicate) - (symbol? predicate)) - (error "Triple predicate not a string or symbol:" - (list subject predicate object))) - (unless (or (string? object) - (symbol? object) - (number? object)) - (error "Triple object not a string, symbol or number:" - (list subject predicate object))) - (let ([pattern (match object - ((or (? symbol? object) - (? (lambda (el) (string-match "^\\[ .* \\]$" el)) object)) - "~a ~a ~a .~%") - (_ "~a ~a \"~a\" .~%"))]) - (format #t pattern subject predicate - (if (symbol? object) (symbol->string object) object)))) - -(define* (scm->triples alist id - #:optional - (fn triple)) - (for-each (match-lambda - ((predicate . object) - (when (cond - ((string? object) - (not (string-blank? object))) - (else object)) - (fn id predicate object)))) - alist)) - -(define (string->binomial-name name) - (let ((binomial? - (string-match - "\\\(.+\\)" - name))) - (string->identifier - "" - (if binomial? - (regexp-substitute/global - #f "[^[:space:]A-Za-z0-9:]" - (match:substring binomial?) - 'pre "" 'post) - name) - #:separator "" - #:proc string-capitalize-first))) -- cgit v1.2.3