From 2d2e570528380084e4cea5a5fcaff6049295227d Mon Sep 17 00:00:00 2001 From: Munyoki Kilyungi Date: Thu, 17 Aug 2023 18:23:41 +0300 Subject: Rename gnt:species -> gnt:belongsToSpecies Signed-off-by: Munyoki Kilyungi --- examples/dump-probeset-data.scm | 2 ++ examples/dump-species-metadata.scm | 12 ++++++------ 2 files changed, 8 insertions(+), 6 deletions(-) diff --git a/examples/dump-probeset-data.scm b/examples/dump-probeset-data.scm index 7ab723d..54615bc 100755 --- a/examples/dump-probeset-data.scm +++ b/examples/dump-probeset-data.scm @@ -94,6 +94,8 @@ '(("gn:" "") ("gnc:" "") ("gnt:" "") + ("skos:" "") + ("owl:" "") ("rdf:" "") ("rdfs:" "") ("xsd:" ""))) diff --git a/examples/dump-species-metadata.scm b/examples/dump-species-metadata.scm index 2f229e9..3bbda51 100755 --- a/examples/dump-species-metadata.scm +++ b/examples/dump-species-metadata.scm @@ -102,10 +102,10 @@ At this point it is not very clear how Name, Name2, Symbol and Alias are used. (left-join Species "ON Strain.SpeciesId = Species.SpeciesId"))) (schema-triples (gnc:strain skos:broader gnc:species) - (gnt:species rdfs:domain gnc:strain) - (gnt:species skos:definition "This resource belongs to this species") - (gnt:species a owl:ObjectProperty) - (gnt:species skos:definition "This resource belongs to this species") + (gnt:belongsToSpecies rdfs:domain gnc:strain) + (gnt:belongsToSpecies skos:definition "This resource belongs to this species") + (gnt:belongsToSpecies a owl:ObjectProperty) + (gnt:belongsToSpecies skos:definition "This resource belongs to this species") (gnt:alias rdfs:domain gnc:strain) (gnt:alias a owl:ObjectProperty) (gnt:symbol rdfs:domain gnc:strain) @@ -119,7 +119,7 @@ At this point it is not very clear how Name, Name2, Symbol and Alias are used. #:separator "" #:proc string-capitalize-first) (set rdf:type 'gnc:strain) - (set gnt:species + (set gnt:belongsToSpecies (string->identifier "" (remap-species-identifiers (field Species Fullname)) #:separator "" #:proc string-capitalize-first)) @@ -170,7 +170,7 @@ At this point it is not very clear how Name, Name2, Symbol and Alias are used. (set gnt:family (field InbredSet Family)) (set gnt:mappingMethod (field MappingMethod Name)) (set gnt:code (field InbredSet InbredSetCode)) - (set gnt:species + (set gnt:belongsToSpecies (string->identifier "" (remap-species-identifiers (field Species Fullname)) #:separator "" #:proc string-capitalize-first)) -- cgit v1.2.3