From 1bfca2fc212239d01831bfad336bc44e4cc9056d Mon Sep 17 00:00:00 2001
From: Arun Isaac
Date: Wed, 1 Dec 2021 18:02:12 +0530
Subject: Deal with AvgMethodId = 0.

* dump.scm (dump-info-files): Deal with AvgMethodId.
---
 dump.scm | 9 ++++++++-
 1 file changed, 8 insertions(+), 1 deletion(-)

diff --git a/dump.scm b/dump.scm
index 4538e3f..587cdbf 100755
--- a/dump.scm
+++ b/dump.scm
@@ -388,6 +388,13 @@ GROUP BY Email"))
                                    (('gn:email . email)
                                     (cons 'gn:datasetOfInvestigator
                                           (investigator-email->id email)))
+                                   (('gn:avgMethodId . avg-method-id)
+                                    ;; If avg-method-id is 0, a
+                                    ;; non-existent method, assume
+                                    ;; N/A.
+                                    (and (zero? avg-method-id)
+                                         (cons 'gn:normalization
+                                               (avg-method-name->id "N/A"))))
                                    (('gn:avgMethodName . avg-method-name)
                                     (cons 'gn:normalization
                                           (avg-method-name->id avg-method-name)))
@@ -425,7 +432,7 @@ Species.FullName AS BinomialName,
 InbredSet.Name AS InbredSetName,
 Tissue.Short_Name,
 Investigators.Email,
-AvgMethod.Name AS AvgMethodName,
+AvgMethodId, AvgMethod.Name AS AvgMethodName,
 GeneChip.Name AS GeneChip
 FROM InfoFiles
 LEFT JOIN Datasets USING (DatasetId)
-- 
cgit v1.2.3