From 687609d61c1c990222140a955687e1d11857c257 Mon Sep 17 00:00:00 2001
From: Efraim Flashner
Date: Wed, 20 Sep 2023 03:13:44 -0500
Subject: Update pluto service

---
 pluto-channels.scm        | 8 ++++----
 run_pluto.sh              | 5 ++---
 shepherd/init.d/pluto.scm | 3 +--
 3 files changed, 7 insertions(+), 9 deletions(-)

diff --git a/pluto-channels.scm b/pluto-channels.scm
index 10257cf..149867c 100644
--- a/pluto-channels.scm
+++ b/pluto-channels.scm
@@ -1,14 +1,14 @@
 (list
   (channel
     (name 'gn-bioinformatics)
-    (url "https://gitlab.com/genenetwork/guix-bioinformatics")
+    (url "https://git.genenetwork.org/guix-bioinformatics/")
     (commit
-      "ac5eef9bfb431fac6fdfc60dd06ef44607787b76"))
+      "f1b32a21b7c45e3b974ecb543d845c2246339367"))
   (channel
     (name 'guix-past)
     (url "https://gitlab.inria.fr/guix-hpc/guix-past")
     (commit
-      "247a14c67af91febfbd5b7f60be9f64945fba713")
+      "1e25b23faa6b1716deaf7e1782becb5da6855942")
     (introduction
       (make-channel-introduction
         "0c119db2ea86a389769f4d2b9c6f5c41c027e336"
@@ -18,7 +18,7 @@
     (name 'guix)
     (url "https://git.savannah.gnu.org/git/guix.git")
     (commit
-      "79358a99cd46a27fdc716309ccee2596483ab9af")
+      "15c5f1a2c20b21de0f19f42db1ccab4c42117ebb")
     (introduction
       (make-channel-introduction
         "9edb3f66fd807b096b48283debdcddccfea34bad"
diff --git a/run_pluto.sh b/run_pluto.sh
index 0acf720..7e61fb6 100755
--- a/run_pluto.sh
+++ b/run_pluto.sh
@@ -1,8 +1,7 @@
 #!/bin/sh
 
-# Update the path to runpluto as the guix-profile changes.
-/home/shepherd/guix-profiles/pluto/bin/guix shell --container --network --no-cwd julia-visuals -- /gnu/store/wbci39sd5pqrjrb5ak0lkmv9jhnl35kv-julia-visuals-0.0.0-1.e7d670e/runpluto.sh
+/home/shepherd/guix-profiles/pluto/bin/guix build --no-grafts --cores=12 julia-visuals
+/home/shepherd/guix-profiles/pluto/bin/guix shell --container --network --pure julia-visuals nss-certs julia --expose=/etc/ssl --share=/home/shepherd/.julia=/home/shepherd/.julia -- runsliderserver
 
 # Path found in the manifest file in the guix-profile
 #$(/home/shepherd/guix-profiles/pluto/bin/guix system container /gnu/store/7zhrc956fl9v4x0fvaav5w8fj1ch3rpa-gn-bioinformatics/share/guile/site/3.0/gn/services/pluto.scm --network)
-#$(/home/shepherd/guix-profiles/pluto/bin/guix system container -L /home/shepherd/guix-past/modules/ -L /home/shepherd/guix-bioinformatics/ /home/shepherd/guix-bioinformatics/gn/services/pluto.scm --network)
diff --git a/shepherd/init.d/pluto.scm b/shepherd/init.d/pluto.scm
index 23a696e..6a985ca 100644
--- a/shepherd/init.d/pluto.scm
+++ b/shepherd/init.d/pluto.scm
@@ -3,8 +3,7 @@
 	#:provides '(pluto)
 	#:docstring "Run a pluto web server"
 	#:start (make-forkexec-constructor
-		  ;; Update the path to runpluto as the guix-profile changes.
-		  '("/home/shepherd/guix-profiles/pluto/bin/guix" "shell" "--container" "--network" "--no-cwd" "julia-visuals" "--" "/gnu/store/wbci39sd5pqrjrb5ak0lkmv9jhnl35kv-julia-visuals-0.0.0-1.e7d670e/runpluto.sh")
+		  '("/home/shepherd/run_pluto.sh")
 		  #:log-file "/home/shepherd/logs/pluto.log")
 	#:stop (make-kill-destructor)
 	#:respawn? #t))
-- 
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