From 18f77179e74ea28a0eb2c9527350627e00a11139 Mon Sep 17 00:00:00 2001
From: Efraim Flashner
Date: Thu, 5 Mar 2020 14:52:47 +0000
Subject: shepherd: add singlecellrshiny

---
 shepherd/init.d/singlecell.scm   | 13 +++++++++++++
 shepherd/init.d/test-upgrade.scm |  3 ++-
 2 files changed, 15 insertions(+), 1 deletion(-)
 create mode 100644 shepherd/init.d/singlecell.scm

diff --git a/shepherd/init.d/singlecell.scm b/shepherd/init.d/singlecell.scm
new file mode 100644
index 0000000..5492e31
--- /dev/null
+++ b/shepherd/init.d/singlecell.scm
@@ -0,0 +1,13 @@
+(define rn6app
+  (make <service>
+	#:provides '(singlecell)
+	#:docstring "Run Single Cell R-Shiny app"
+	#:start (make-forkexec-constructor
+		  ;(system* "/var/guix/profiles/per-user/shepherd/current-guix/bin/guix" "environment" "--ad-hoc" "singlecellrshiny" "--" "sh" "-c" "\\'R_LIBS_USER=$GUIX_ENVIRONMENT/site-library/ singlecellrshiny\\'")
+		  '("/home/shepherd/run_singlecell.sh")
+		  #:log-file "/home/shepherd/logs/singlecell.log")
+	#:stop (make-kill-destructor)
+	#:respawn? #t))
+(register-services singlecell)
+
+;(start singlecell)
diff --git a/shepherd/init.d/test-upgrade.scm b/shepherd/init.d/test-upgrade.scm
index 0c17303..80ae7dc 100644
--- a/shepherd/init.d/test-upgrade.scm
+++ b/shepherd/init.d/test-upgrade.scm
@@ -6,7 +6,8 @@
 		  ;; First attempt to build all the packages and only afterward attempt to build the containers.
 		  (when (zero? (system* "guix" "build" "-L" "/home/shepherd/guix-bioinformatics"
 					"--no-grafts" "bnw" "gitea" "go-ipfs" "edirect-gn"
-					"bxd-power-calculator-app" "rn6-assembly-error-app"))
+					"bxd-power-calculator-app" "rn6-assembly-error-app"
+					"singlecellrshiny"))
 		    (zero? (system* "guix" "system" "-L" "/home/shepherd/guix-bioinformatics"
 				    "container" "/home/shepherd/guix-bioinformatics/gn/services/bnw-container.scm"
 				    "--share=/home/shepherd/logs/bnw-server=/var/log" "--network")))
-- 
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