#! /bin/bash -e

# genenetwork-machines --- Guix configuration for genenetwork machines
# Copyright © 2022, 2024 Arun Isaac <arunisaac@systemreboot.net>
# Copyright © 2022, 2024 Frederick M. Muriithi <fredmanglis@gmail.com>
#
# This file is part of genenetwork-machines.
#
# genenetwork-machines is free software: you can redistribute it
# and/or modify it under the terms of the GNU General Public License
# as published by the Free Software Foundation, either version 3 of
# the License, or (at your option) any later version.
#
# genenetwork-machines is distributed in the hope that it will be
# useful, but WITHOUT ANY WARRANTY; without even the implied warranty
# of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
# General Public License for more details.
#
# You should have received a copy of the GNU General Public License
# along with genenetwork-machines.  If not, see
# <https://www.gnu.org/licenses/>.

# Build and install genenetwork production container on tux02.

SCRIPTARGS=("$@")

MODULEARGS=()
if [ "${#SCRIPTARGS[@]}" -gt 0 ]
then
    echo "===== Auxilliary module load paths ====="
    for path in "${SCRIPTARGS[@]}"
    do
	echo "-L ${path}"
	MODULEARGS+=("-L" "${path}")
    done
    echo "===== END: Auxilliary module load paths ====="
fi

container_script=$(guix system container \
			"${MODULEARGS[@]}" \
                        --network \
                        --load-path=. \
                        --verbosity=3 \
                        --share=/export2/guix-containers/genenetwork/uploader/var/genenetwork=/var/genenetwork \
                        --share=/export2/guix-containers/genenetwork/uploader/var/lib/acme=/var/lib/acme \
                        --share=/export2/guix-containers/genenetwork/uploader/var/lib/mysql=/var/lib/mysql \
                        --share=/export2/guix-containers/genenetwork/uploader/var/lib/virtuoso=/var/lib/virtuoso \
                        --share=/export2/guix-containers/genenetwork/uploader/var/log=/var/log \
                        --share=/export2/guix-containers/genenetwork/uploader/etc/genenetwork=/etc/genenetwork \
                        --expose=/export/data/uploader/genenetwork-xapian=/export/data/genenetwork-xapian \
                        --share=/export/data/uploader/genenetwork-sqlite=/export/data/genenetwork-sqlite \
                        --expose=/export/data/genenetwork/genotype_files=/export/data/genenetwork/genotype_files \
                        --expose=/export/data/uploader/genenetwork3 \
                        --share=/export/data/uploader/gn-uploader \
                        --share=/var/run/mysqld3307=/run/mysqld \
                        uploader.scm)

echo "${container_script}"
sudo ln --force --symbolic "${container_script}" /usr/local/bin/genenetwork-uploader-container
sudo ln --force --symbolic /usr/local/bin/genenetwork-uploader-container /var/guix/gcroots