This repository houses Guix configuration for GeneNetwork machines and
containers.

* GeneNetwork development container

The GeneNetwork development container is run on /penguin2/. It runs
continuous integration and continuous deployment services for
genenetwork2, genenetwork3 and several other associated projects.

To build and install the container, you will need the
guix-bioinformatics and guix-forge channels. Once these channels are
pulled and available, on /penguin2/, run
#+BEGIN_SRC shell
$ ./genenetwork-development-deploy.sh
#+END_SRC

/penguin2/ is configured with a systemd service to run this
container. Restart it.
#+BEGIN_SRC shell
$ sudo systemctl restart genenetwork-development-container
#+END_SRC

* Virtuoso container for tux01 production

The virtuoso container is run on /tux01/ production. It runs virtuoso
alone.

To build and install the container, you will need the
guix-bioinformatics channel. Once guix-bioinformatics is pulled and
available, on /tux01/, run
#+begin_src shell
  $ ./virtuoso-deploy.sh
#+end_src

/tux01/ is configured with a systemd service to run this
container. Restart it.
#+begin_src shell
  $ sudo systemctl restart virtuoso-container
#+end_src

* Secure virtuoso authentication

In containers containing virtuoso instances, it is important to secure
authentication by changing default user passwords and disabling
unnecessary users. See [[https://issues.genenetwork.org/topics/systems/virtuoso][virtuoso gemtext documentation]] on passwords for
more details.