From 676c578ffe2d35197542f636eb21bae4a75d0057 Mon Sep 17 00:00:00 2001
From: Arun Isaac
Date: Wed, 18 Jan 2023 18:09:29 +0000
Subject: Add data directory to genenetwork configuration.

*
genenetwork-development.scm (<genenetwork-configuration>)[data-directory]:
New field.
(genenetwork3-cd-gexp): Set DATA_DIR in settings file.
(genenetwork-shepherd-services): Map data directory into container.
(operating-system)[services]: Set data-directory of genenetwork
service to /export/data/genenetwork.
* genenetwork-development-deploy.sh: Expose entire data directory
/export/data/genenetwork instead of the contained genotype files
directory.
---
 genenetwork-development-deploy.sh | 3 +--
 1 file changed, 1 insertion(+), 2 deletions(-)

(limited to 'genenetwork-development-deploy.sh')

diff --git a/genenetwork-development-deploy.sh b/genenetwork-development-deploy.sh
index ee3d12e..b7f469d 100755
--- a/genenetwork-development-deploy.sh
+++ b/genenetwork-development-deploy.sh
@@ -29,8 +29,7 @@ container_script=$(guix system container --network \
                         --share=/export2/guix-containers/genenetwork-development/var/lib/tissue=/var/lib/tissue \
                         --share=/export2/guix-containers/genenetwork-development/var/lib/virtuoso=/var/lib/virtuoso \
                         --share=/export2/guix-containers/genenetwork-development/var/log/cd=/var/log/cd \
-                        --expose=/export/data/genenetwork/genotype_files \
-                        --share=/export/data/genenetwork/xapian \
+                        --expose=/export/data/genenetwork \
                         --share=/export/data/genenetwork-xapian \
                         --share=/export/genenetwork-database-dump \
                         --share=/var/run/mysqld/mysqld.sock=/run/mysqld/mysqld.sock \
-- 
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