From 47e0d51c9498c82f2639a03b5cf988b5904688fb Mon Sep 17 00:00:00 2001
From: Arun Isaac
Date: Thu, 22 Dec 2022 10:23:22 +0000
Subject: Build and install xapian index nightly.

* genenetwork-development.scm: Import (gnu services mcron).
(%xapian-directory): New variable.
(build-xapian-index-gexp): New function.
(genenetwork-projects): Add genenetwork3-build-xapian-index CI job to
genenetwork3 project.
(operating-system)[sudoers-file]: Allow laminar user to start and stop
genenetwork3.
[services]: Add mcron service to trigger nightly xapian build. Use
%xapian-directory instead of its literal value. chown
%xapian-directory to the laminar user.
---
 genenetwork-development-deploy.sh | 3 ++-
 1 file changed, 2 insertions(+), 1 deletion(-)

(limited to 'genenetwork-development-deploy.sh')

diff --git a/genenetwork-development-deploy.sh b/genenetwork-development-deploy.sh
index ac5acd5..93d5987 100755
--- a/genenetwork-development-deploy.sh
+++ b/genenetwork-development-deploy.sh
@@ -29,7 +29,8 @@ container_script=$(guix system container --network \
                         --share=/export2/guix-containers/genenetwork-development/var/lib/tissue=/var/lib/tissue \
                         --share=/export2/guix-containers/genenetwork-development/var/lib/virtuoso=/var/lib/virtuoso \
                         --share=/export2/guix-containers/genenetwork-development/var/log/cd=/var/log/cd \
-                        --expose=/export/data/genenetwork \
+                        --expose=/export/data/genenetwork/genotype_files \
+                        --share=/export/data/genenetwork/xapian \
                         --share=/export/genenetwork-database-dump \
                         --share=/var/run/mysqld/mysqld.sock=/run/mysqld/mysqld.sock \
                         genenetwork-development.scm)
-- 
cgit v1.2.3