From 9a476db52c8ddcb7a3b64ee999fe91645c085673 Mon Sep 17 00:00:00 2001
From: Frederick Muriuki Muriithi
Date: Tue, 28 Jan 2025 16:12:43 -0600
Subject: Pass virtuoso's ttl directory to the xapian indexer script.

Pass the directory containing virtuoso's turtle (ttl) files to the
indexer.
---
 genenetwork/services/genenetwork.scm | 10 ++++++++--
 1 file changed, 8 insertions(+), 2 deletions(-)

diff --git a/genenetwork/services/genenetwork.scm b/genenetwork/services/genenetwork.scm
index 140b469..d01bec3 100644
--- a/genenetwork/services/genenetwork.scm
+++ b/genenetwork/services/genenetwork.scm
@@ -172,6 +172,8 @@
          (genenetwork3 (genenetwork-configuration-genenetwork3 config))
          (xapian-directory (genenetwork-configuration-xapian-db config))
          (sparql-endpoint (genenetwork-configuration-sparql-endpoint config))
+         (virtuoso-ttl-directory
+          (genenetwork-configuration-gn-virtuoso-ttl-directory config))
          (xapian-build-directory (string-append xapian-directory "/build"))
          (herd (file-append shepherd "/bin/herd"))
          (index-genenetwork (file-append genenetwork3 "/bin/index-genenetwork"))
@@ -205,7 +207,9 @@
                                                   "is-data-modified"
                                                   #$xapian-directory
                                                   #$sql-uri
-                                                  #$sparql-endpoint))))
+                                                  #$sparql-endpoint
+                                                  "--virtuoso-ttl-directory"
+                                                  #$virtuoso-ttl-directory))))
             (dynamic-wind
               (const #t)
               ;; build the index
@@ -214,7 +218,9 @@
                         "create-xapian-index"
                         #$xapian-build-directory
                         #$sql-uri
-                        #$sparql-endpoint)
+                        #$sparql-endpoint
+                        "--virtuoso-ttl-directory"
+                        #$virtuoso-ttl-directory)
                 (dynamic-wind
                   ;; stop GN3: Here there is magic!!!
                   ;;     The name `gunicorn-genenetwork' is magical. It is not set
-- 
cgit v1.2.3