From 2ef9cebfa7daaf79ccd1d3a336d19da78af83256 Mon Sep 17 00:00:00 2001
From: Munyoki Kilyungi
Date: Tue, 20 Jun 2023 17:23:03 +0300
Subject: Add virtuoso allowed dirs

---
 genenetwork-development-deploy.sh | 1 +
 genenetwork-development.scm       | 1 +
 public-sparql-deploy.sh           | 1 +
 public-sparql.scm                 | 1 +
 4 files changed, 4 insertions(+)

diff --git a/genenetwork-development-deploy.sh b/genenetwork-development-deploy.sh
index 85e0cbd..0edd2cb 100755
--- a/genenetwork-development-deploy.sh
+++ b/genenetwork-development-deploy.sh
@@ -32,6 +32,7 @@ container_script=$(guix system container --network \
                         --share=/export2/guix-containers/genenetwork-development/var/lib/tissue=/var/lib/tissue \
                         --share=/export2/guix-containers/genenetwork-development/var/lib/virtuoso=/var/lib/virtuoso \
                         --share=/export2/guix-containers/genenetwork-development/var/log/cd=/var/log/cd \
+			--share=/export/data/genenetwork-virtuoso=/var/lib/data \
                         --expose=/export/data/genenetwork \
                         --share=/export/data/genenetwork-xapian \
                         --share=/export/data/genenetwork-sqlite \
diff --git a/genenetwork-development.scm b/genenetwork-development.scm
index 386e401..c10af91 100644
--- a/genenetwork-development.scm
+++ b/genenetwork-development.scm
@@ -1063,6 +1063,7 @@ reverse proxy tissue."
 			     (number-of-buffers 4000000)
 			     (maximum-dirty-buffers 3000000)
                              (server-port 9081)
+			     (dirs-allowed "/var/lib/data")
                              (http-server-port %virtuoso-sparql-port)))
                    (service genenetwork-service-type
                             (genenetwork-configuration
diff --git a/public-sparql-deploy.sh b/public-sparql-deploy.sh
index f94dc82..bc4c23a 100755
--- a/public-sparql-deploy.sh
+++ b/public-sparql-deploy.sh
@@ -24,6 +24,7 @@ container_script=$(guix system container \
                         --verbosity=3 \
                         --share=/export2/guix-containers/public-sparql/var/lib/mysql=/var/lib/mysql \
                         --share=/export2/guix-containers/public-sparql/var/lib/virtuoso=/var/lib/virtuoso \
+			--share=/export/data/genenetwork-virtuoso=/var/lib/data \
                         public-sparql.scm)
 
 echo $container_script
diff --git a/public-sparql.scm b/public-sparql.scm
index 2827f66..9781b5d 100644
--- a/public-sparql.scm
+++ b/public-sparql.scm
@@ -54,6 +54,7 @@ SPARQL endpoint is listening on."
                              (server-port %virtuoso-port)
                              (http-server-port %sparql-port)
 			     (number-of-buffers 4000000)
+			     (dirs-allowed "/var/lib/data")
 			     (maximum-dirty-buffers 3000000)))
                    (service nginx-service-type
                             (nginx-configuration
-- 
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