#! Run from base dir with .guix-shell -- guile -L . -s ./scripts/precompute/precompute-hits.scm !# (use-modules (dbi dbi) (gn db mysql) (rnrs base) (ice-9 match) ) ;; potentially you want to test connection with mysql client: ;; ;; mysql -uwebqtlout -pwebqtlout -A -h 127.0.0.1 -P 3306 db_webqtl -e "show tables;" ;; (define db (dbi-open "mysql" "webqtlout:webqtlout:db_webqtl:tcp:127.0.0.1:3306")) (db-check db) (dbi-query db "SELECT * FROM ProbeSetXRef LIMIT 3") (db-check db) ; (display (dbi-get_status db_webqtl)) (let [(row (dbi-get_row db))] (display row) ) (dbi-query db "SELECT StrainId,Strain.Name FROM Strain, StrainXRef WHERE StrainXRef.StrainId = Strain.Id AND StrainXRef.InbredSetId = 1 AND Used_for_mapping='Y' ORDER BY StrainId;") (db-check db) (define (get-rows db) (let [(row (dbi-get_row db))] (if row (begin (display row) (get-rows db) ) #f ) )) (get-rows db)