From 1b37b7738a4c756503ceaaa2645592521abd86f3 Mon Sep 17 00:00:00 2001 From: Pjotr Prins Date: Thu, 27 Jun 2024 05:34:00 -0500 Subject: Run gemma-wrapper in a container --- scripts/precompute/run-gemma.scm | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) (limited to 'scripts/precompute/run-gemma.scm') diff --git a/scripts/precompute/run-gemma.scm b/scripts/precompute/run-gemma.scm index 48222b4..e6a4e26 100755 --- a/scripts/precompute/run-gemma.scm +++ b/scripts/precompute/run-gemma.scm @@ -9,7 +9,7 @@ Run from base dir with and with some extra paths (for gemma) -guix shell -C -F xz tar time parallel gemma coreutils-minimal guile guile-dbi guile-json ruby --expose=/home/wrk/iwrk/opensource/code/genetics/gemma-wrapper/=/gemma-wrapper --expose=/home/wrk/iwrk/opensource/code/genetics/gemma/=/gemma -- env TMPDIR=tmp guile -L . -e main -s ./scripts/precompute/run-gemma.scm test +~/opt/guix-pull/bin/guix shell -C -F xz tar time parallel coreutils-minimal guile guile-dbi guile-json ruby --expose=/home/wrk/iwrk/opensource/code/genetics/gemma-wrapper/=/gemma-wrapper --expose=/home/wrk/iwrk/opensource/code/genetics/gemma/=/gemma -- env TMPDIR=tmp GEMMA_COMMAND=/gemma/bin/gemma-0.98.5-linux-static-debug guile -L . -e main -s ./scripts/precompute/run-gemma.scm !# -- cgit v1.2.3