From 798e2adce714d8ed21092f558bebfb0d344b12dd Mon Sep 17 00:00:00 2001
From: Frederick Muriuki Muriithi
Date: Tue, 19 Nov 2024 12:24:12 -0600
Subject: Make repo a channel. Link to guix-bioinformatics.

* .guix-channel: Specify this channel's details. Add
  "guix-bioinformatics" channel as a dependency.
* .guix/modules/gn-guile.scm: Inherit package definition from the
  guix-bioinformatics definition of this package.
* guix.scm: Symlink to .guix/modules/gn-guile.scm
---
 guix.scm | 80 +---------------------------------------------------------------
 1 file changed, 1 insertion(+), 79 deletions(-)
 mode change 100644 => 120000 guix.scm

(limited to 'guix.scm')

diff --git a/guix.scm b/guix.scm
deleted file mode 100644
index 1cde2e0..0000000
--- a/guix.scm
+++ /dev/null
@@ -1,79 +0,0 @@
-;; To use this file to build HEAD of gn-guile:
-;;
-;;   guix build -f guix.scm
-;;
-;; To get a development container
-;;
-;;   guix shell -C -D -f guix.scm
-;;
-
-(define-module (gn-guile-package)
-  #:use-module ((guix licenses) #:prefix license:)
-  #:use-module (guix gexp)
-  #:use-module (guix packages)
-  #:use-module (guix git-download)
-  #:use-module (guix build-system guile)
-  #:use-module (guix utils)
-  #:use-module (gnu packages build-tools)
-  #:use-module  (gnu packages package-management)
-  #:use-module ((gnu packages bash) #:select (bash-minimal))
-  #:use-module ((gnu packages bioinformatics) #:select (gemma))
-  #:use-module ((gnu packages certs) #:select (nss-certs))
-  #:use-module ((gnu packages guile) #:select (guile-json-4 guile-3.0 guile-readline))
-  #:use-module ((gnu packages guile-xyz) #:select (guile-dbi guile-dbd-mysql guile-fibers guile-redis guile-hashing guile-commonmark))
-  #:use-module ((gnu packages parallel) #:select (parallel))
-  #:use-module ((gnu packages perl) #:select (perl))
-  #:use-module ((gnu packages tls) #:select (guile-gnutls openssl))
-  #:use-module (srfi srfi-1)
-  #:use-module (ice-9 popen)
-  #:use-module (ice-9 rdelim))
-
-(define %source-dir (dirname (current-filename)))
-
-(define %git-commit
-    (read-string (open-pipe "git show HEAD | head -1 | cut -d ' ' -f 2" OPEN_READ)))
-
-(define-public gn-guile-git
-  (package
-    (name "gn-guile-git")
-    (version (git-version "4.0.0-" "HEAD" %git-commit))
-    (source (local-file %source-dir
-			#:recursive? #t
-			#:select? (or (git-predicate (dirname (current-source-directory)))
-                                      (const #t))))
-    (build-system guile-build-system)
-    (propagated-inputs
-     (list guile-3.0 guile-dbi guile-dbd-mysql guile-fibers guile-gnutls guile-readline
-	   guile-commonmark guile-redis openssl nss-certs gemma parallel guile-hashing
-           guile-json-4))
-    (arguments
-     (list
-      #:phases
-      #~(modify-phases %standard-phases
-	  ;; When using the guile-build-system, guild doesn't
-	  ;; correctly set the GUILE_LOAD_PATH for the various guile
-	  ;; packages in the build phase leading to build failures.
-	  (add-before 'build 'augment-GUILE_LOAD_PATH
-	    (lambda* (#:key outputs #:allow-other-keys)
-	      (let* ((guile-version (target-guile-effective-version))
-		     (guile-dbi-scm (string-append #$guile-dbi "/share/guile/site/2.2")))
-		;; guild uses this: "\\.(scm|sls)$" regexp to try and
-		;; compile all scm files in this repository.  We don't
-		;; need to compile guix.scm
-		(delete-file "guix.scm")
-		(setenv "GUILE_LOAD_PATH"
-			(string-append
-			 guile-dbi-scm ":"
-			 (format
-			  #f "~{~a:~}"
-			  (map (lambda (package)
-				 (format #f "~a/share/guile/site/~a"
-					 package guile-version))
-			       (list #$guile-fibers #$guile-commonmark #$guile-json-4 #$guile-hashing)))
-			 #$(getenv "GUILE_LOAD_PATH")))))))))
-    (home-page "https://git.genenetwork.com/gn-guile")
-    (synopsis "Next generation GN code in guile")
-    (description "Use of guile.")
-    (license license:gpl3)))
-
-gn-guile-git
diff --git a/guix.scm b/guix.scm
new file mode 120000
index 0000000..973f44f
--- /dev/null
+++ b/guix.scm
@@ -0,0 +1 @@
+.guix/modules/gn-guile.scm
\ No newline at end of file
-- 
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