From a1511cae7937ea60abdaf56e759f1066c2e83b13 Mon Sep 17 00:00:00 2001
From: Pjotr Prins
Date: Sun, 5 May 2024 13:35:33 +0200
Subject: List data-ids (trait ids) for a batch

---
 gn/data/strains.scm | 12 +++++++-----
 1 file changed, 7 insertions(+), 5 deletions(-)

(limited to 'gn/data/strains.scm')

diff --git a/gn/data/strains.scm b/gn/data/strains.scm
index 39fe71e..f1348ac 100644
--- a/gn/data/strains.scm
+++ b/gn/data/strains.scm
@@ -17,21 +17,23 @@
             bxd-strain-id-names
             ))
 
-(define* (strain-id-names inbred-set #:key (map? #f))
+(define* (strain-id-names inbred-set #:key (used-for-mapping? #f))
   "Return assoc list of tuples of strain id+names:
    ((4 . BXD1) (5 . BXD2) (6 . BXD5) (7 . BXD6)...
 
-map? will say whether the strains/individuals are used for mapping.
+used-for-mapping? will say whether the strains/individuals are used for mapping.
 "
   (call-with-db
    (lambda (db)
      (dbi-query db (string-append "SELECT StrainId,Strain.Name FROM Strain, StrainXRef WHERE StrainXRef.StrainId = Strain.Id AND StrainXRef.InbredSetId = " (int-to-string inbred-set)
-                                  (if map?
+                                  (if used-for-mapping?
                                       " AND Used_for_mapping='Y'"
                                       "")
                                   " ORDER BY StrainId;"))
       (get-rows-apply db (lambda (r) `(,(assoc-ref r "StrainId") . ,(assoc-ref r "Name"))) '()))))
 
-(define* (bxd-strain-id-names #:key (map? #f))
-  "Return assoc list of tuples of strain id + names. Same as strain-id-names, but just for the BXD"
+(define* (bxd-strain-id-names #:key (used-for-mapping? #f))
+  "Return assoc list of tuples of strain id + names. Same as strain-id-names, but just for the BXD
+
+used-for-mapping? will say whether the strains/individuals are used for mapping."
    (strain-id-names 1))
-- 
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