# GN1 annotation page broken


## Tags

* assigned: zsloan, pjotrp
* priority: high
* status: overdue
* type: bug
* keywords: GN1, genenetwork1, annotation, from github

## Tasks

* [ ] Fix PHP view
* [ ] Fix CKEDITOR

## Description

Turns out that it is a PHP page that is not working. Also CKEDITOR is not visible.

=> https://github.com/genenetwork/genenetwork2/issues/421 From GitHub

=> http://gn1.genenetwork.org/webqtl/main.py?FormID=annotation The annotations page in GN1
is broken. An exception stack trace is displayed, instead of the annotations page content.

## Info

Lily runs a PHP from 2006(!)

PHP 5.1.6 (cli) (built: Mar 18 2014 20:48:55)
Copyright (c) 1997-2006 The PHP Group
Zend Engine v2.1.0, Copyright (c) 1998-2006 Zend Technologies

In guix-bioinformatics we have

```
php     5.6.40  out     /home/gn1/guix-bioinformatics/gn/packages/php.scm:14:2
```

Even if this page is for windows, it is the best description of using PHP:

=> https://www.thesitewizard.com/php/install-php-5-apache-windows.shtml

On lily:

```
AddType application/x-httpd-php .htm .html
```

And Apache:

```
[root@lily conf]# /usr/sbin/httpd -V
Server version: Apache/2.2.3
Server built:   Sep 16 2014 11:05:09
Server's Module Magic Number: 20051115:3
Server loaded:  APR 1.2.7, APR-Util 1.2.7
Compiled using: APR 1.2.7, APR-Util 1.2.7
Architecture:   64-bit
Server MPM:     Prefork
  threaded:     no
    forked:     yes (variable process count)
Server compiled with....
 -D APACHE_MPM_DIR="server/mpm/prefork"
 -D APR_HAS_SENDFILE
 -D APR_HAS_MMAP
 -D APR_HAVE_IPV6 (IPv4-mapped addresses enabled)
 -D APR_USE_SYSVSEM_SERIALIZE
 -D APR_USE_PTHREAD_SERIALIZE
 -D SINGLE_LISTEN_UNSERIALIZED_ACCEPT
 -D APR_HAS_OTHER_CHILD
 -D AP_HAVE_RELIABLE_PIPED_LOGS
 -D DYNAMIC_MODULE_LIMIT=128
 -D HTTPD_ROOT="/etc/httpd"
 -D SUEXEC_BIN="/usr/sbin/suexec"
 -D DEFAULT_PIDLOG="run/httpd.pid"
 -D DEFAULT_SCOREBOARD="logs/apache_runtime_status"
 -D DEFAULT_LOCKFILE="logs/accept.lock"
 -D DEFAULT_ERRORLOG="logs/error_log"
 -D AP_TYPES_CONFIG_FILE="conf/mime.types"
 -D SERVER_CONFIG_FILE="conf/httpd.conf"
```

This is similar what we have in Guix GN1. No mention of PHP in either.

For simplicity we may switch to php-cgi

=> https://stackoverflow.com/questions/28823252/installing-php-5-3-29-from-sources-on-ubuntu-14-with-apache-2-module

=> https://www.bobulous.org.uk/coding/apache-php-cgi.html