From e48a34504d4a1e2f8ca5b4070f3b441aff9cfcf6 Mon Sep 17 00:00:00 2001
From: Alexander_Kabui
Date: Tue, 15 Oct 2024 11:04:58 +0300
Subject: Add link to  Terminal emulator implementation in gn2.

---
 topics/lmms/rqtl2/gn-rqtl-design-implementation.gmi | 8 ++++++--
 1 file changed, 6 insertions(+), 2 deletions(-)

(limited to 'topics')

diff --git a/topics/lmms/rqtl2/gn-rqtl-design-implementation.gmi b/topics/lmms/rqtl2/gn-rqtl-design-implementation.gmi
index ce9c0dc..966b44c 100644
--- a/topics/lmms/rqtl2/gn-rqtl-design-implementation.gmi
+++ b/topics/lmms/rqtl2/gn-rqtl-design-implementation.gmi
@@ -35,6 +35,7 @@ This component involves creating a monitoring system to track the state of the e
 
 ## Deep Dive
 
+
 ### Running the External Script
 The RQTL implementation is in R, and we need a strategy for executing this script as an external process. This can be subdivided into several key steps:
 
@@ -64,8 +65,9 @@ This will involve:
 ## Additional UI Considerations
 We need to rethink where to output the external process logs in the UI. Currently, we can add flags to the URL to enable this functionality, e.g., `URL/page&flags&console=1`.
 Also the design suggestion is to out the results in a terminal emulator for
-example xterm
-See more: https://xtermjs.org/
+example xterm ,See more: https://xtermjs.org/, A current implementation already exists
+for gn3 see
+=> https://github.com/genenetwork/genenetwork2/blob/abe324888fc3942d4b3469ec8d1ce2c7dcbd8a93/gn2/wqflask/templates/wgcna_setup.html#L89
 
 ### Current Design Suggestions:
 #### With HTMX, offer a split screen
@@ -74,6 +76,8 @@ This will include an output page and a monitoring system page.
 #### Popup button for preview
 A button that allows users to preview and hide the console output.
 
+
+
 ## Long-Term Goals
 We aim to run computations on clusters rather than locally. This project will serve as a pioneer for that approach.
 
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