From fe2d644507548dcbaaf8d675d2e5c96795101d70 Mon Sep 17 00:00:00 2001
From: Pjotr Prins
Date: Sun, 3 Dec 2023 09:39:57 -0600
Subject: Move xapian files

---
 topics/xapian/xapian-indexing-on-tux01.gmi | 17 +++++++++++++++++
 1 file changed, 17 insertions(+)
 create mode 100644 topics/xapian/xapian-indexing-on-tux01.gmi

(limited to 'topics/xapian/xapian-indexing-on-tux01.gmi')

diff --git a/topics/xapian/xapian-indexing-on-tux01.gmi b/topics/xapian/xapian-indexing-on-tux01.gmi
new file mode 100644
index 0000000..71a4843
--- /dev/null
+++ b/topics/xapian/xapian-indexing-on-tux01.gmi
@@ -0,0 +1,17 @@
+How to run the Xapian indexing script
+
+Change to Arun's user:
+su aruni
+
+Remove old xapian directory + contents:
+sudo -u aruni rm -r /export/data/genenetwork/xapian
+
+Run guix shell:
+/home/zas1024/opt/guix/bin/guix shell --container --network --share=/export/data/genenetwork/ --development --file=guix.scm
+
+Run the indexer script:
+env PYTHONPATH=. python3 scripts/index-genenetwork /export/data/genenetwork/xapian mysql://webqtlout:webqtlout@127.0.0.1:3306/db_webqtl
+
+OR Put the following in a shell script and run as Arun
+
+rm -r /export/data/genenetwork/xapian && /home/zas1024/opt/guix/bin/guix shell --container --network --share=/export/data/genenetwork/ --development --file=guix.scm -- env PYTHONPATH=. python3 scripts/index-genenetwork /export/data/genenetwork/xapian mysql://webqtlout:webqtlout@127.0.0.1:3306/db_webqtl
-- 
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