From 42e6f37e9d1b0cf7d903dfdc4c5ee53fa625999d Mon Sep 17 00:00:00 2001
From: Pjotr Prins
Date: Sun, 3 Dec 2023 09:35:19 -0600
Subject: Notes on lizardfs

---
 topics/systems/mariadb/precompute-mapping-input-data.gmi | 6 ++++++
 1 file changed, 6 insertions(+)

(limited to 'topics/systems')

diff --git a/topics/systems/mariadb/precompute-mapping-input-data.gmi b/topics/systems/mariadb/precompute-mapping-input-data.gmi
index caad794..12c21da 100644
--- a/topics/systems/mariadb/precompute-mapping-input-data.gmi
+++ b/topics/systems/mariadb/precompute-mapping-input-data.gmi
@@ -918,6 +918,12 @@ select * from StrainXRef WHERE InbredSetId=1 AND Used_for_mapping="Y"
 
 so it looks like we need some extra logic to fetch the used individuals from the actual genotype file(s).
 
+For development I am running:
+
+```
+.guix-shell ruby --expose=/home/wrk/iwrk/opensource/code/genetics/gemma-wrapper/=/gemma-wrapper --expose=/home/wrk/iwrk/opensource/code/genetics/gemma/=/gemma -- guile -L . -s ./scripts/precompute/precompute-hits.scm
+```
+
 ## Writing the phenotype file
 
 For gemma we need to feed a phenotype file that has only the individuals that are in the genotype file (the other 'missing' phenotype values should be NAs).
-- 
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