From a7a5a0a995c1c67ca1e04c4c44c94cfa98f993f4 Mon Sep 17 00:00:00 2001 From: John Nduli Date: Fri, 9 Aug 2024 20:31:14 +0300 Subject: docs: notes for 2024-08-09 --- topics/meetings/jnduli_bmunyoki.gmi | 58 ++++++++++++++++++++++++++++++------- 1 file changed, 48 insertions(+), 10 deletions(-) (limited to 'topics/meetings/jnduli_bmunyoki.gmi') diff --git a/topics/meetings/jnduli_bmunyoki.gmi b/topics/meetings/jnduli_bmunyoki.gmi index 27cc2ec..15714df 100644 --- a/topics/meetings/jnduli_bmunyoki.gmi +++ b/topics/meetings/jnduli_bmunyoki.gmi @@ -1,18 +1,56 @@ # Meeting Notes +## 2024-08-09 + +* @shelby figure out Claude Sonnet stuff: NOT DONE, main focus was on the paper +* @shelby planning session for next work and tasks for Priscilla. +* @shelby format output for ingested paper so that we can test the RAG engine +* @shelby run RAGAs against the queries already in the system to perform comparison with new papers +* @bmunyoki implementation code work to edit Rif + WIki SQL n RDF data +* @bmunyoki @shelby group paper on dissertation to target Arxiv +* @bmunyoki and @alex help Alex deploy gn-guile code on tux02 +* @bmunyoki review UI code editor work +* @alex address comments in UI work +* @felix @fred push RQTL bundles to uploader +* @felix look for means to fix metadata challenge ie. trouble associating data we upload and metadata that provides descriptions. The metadata doesn't meeting requirements. +* @felix figure out how to fix large data uploads ie. most data sets are large e.g. 45GB. Uploader cannot handle these large files. +* @felix @jnduli programming learning: started building a web server to learn backend using Flask. +* @felix (@bmunyoki / @alex) learning emacs so that he figures out how to track times +* @jnduli fix group creation bug in gn-auth +* @jnduli edit rif metadata using gn3 +* @jnduli update documentation for gn-auth setup +* @jnduli investigate more bugs related to gn-auth + +Note: When setting up sync between @jnduli and @felix, add @bmunyoki too. + + ## 2024-08-02 -* @bmunyoki code work to edit Rif + WIki SQL n RDF data -* @bmunyoki group paper on dissertation to target Arxiv -* @bmunyoki fix case insensitivity in Xapian search -* @jnduli review Alex patches -* @shelby figure out Claude Sonnet stuff -* @shelby edit paper with @pjtor +* DONE: @bmunyoki virtuos and xapian updated in prod +* @bmunyoki code work to edit Rif + WIki SQL n RDF data: WIP, we have desired API, but we need to implement code. +* NOT DONE: @bmunyoki group paper on dissertation to target Arxiv +* DONE: @bmunyoki fix case insensitivity in Xapian search +* DONE: @jnduli review Alex patches +* DONE: @bmunyoki: updated gn2 and gn3 on git.genetwork server. Shared QA code with @shelby on a special branch. +* @bmunyoki @jnduli: fixed minor bug on xapian reflected with stemming. +* @shelby figure out Claude Sonnet stuff: NOT DONE, main focus was on the paper +* IN PROGRESS: @shelby edit paper with @pjtor * @shelby planning session for next work and tasks for Priscilla. * @shelby use RAGAS to test R2R with the new papers (follow up on the ingestion of papers tasks) -* @shelby and @boni to discuss R2R and interfacing with Virtuoso -* IN PROGRESS: @jnduli get up to speed on gn-auth -* @alex have an instance of gn-guile running on production -* @jgart getting genecup and rshiny containers to run as normal users instead of root users. May use libvirts APIs; or podman/docker as normal user; or rewriting the services as guix home services. +* @shelby and @boni to discuss R2R and interfacing with Virtuoso: deprioritized, we'll figure out interfacing with R2R. Implementation to happen later. +* DONE: @jnduli get up to speed on gn-auth +* @alex have an instance of gn-guile running on production: Code in prod, but needs to liase with Boni to get this working. +* @jgart getting genecup and rshiny containers to run as normal users instead of root users. May use libvirts APIs; or podman/docker as normal user; or rewriting the services as guix home services: system container doesn't have work around this, there's no work around. Because guix by default needs root to run as a system container. We also need sudo since at root level we define our system containers in a systemd that needs to be run as root. Why systemd? Systemd no one needs to run this. + +### Meeting with Sevila on Masters Papers + +- mainly stylistic changes provided. +- provide an email explaining how long ethical review took, so that he follows up on unexpected delays. +- met up with Dr Betsy, once done with defences in October (hopefully), and Boni may get his degree before graduation next year, to facilitate Boni applying for PhD. + +### Guix Root Container + +- With docker, to prevent the need for sudo, we usually create a docker group, and add users that need to run this to this group. Can this ahppen in guix? +- Guix has a guix group. Why haven't we done this??? @jgart and @boni ## 2024-07-26 Plan for this week: -- cgit v1.2.3