From 1a2c0e52ff88c1b12aa1b8984b3aa6c220dc7bf2 Mon Sep 17 00:00:00 2001
From: Pjotr Prins
Date: Fri, 16 Aug 2024 11:37:29 +0200
Subject: Precompute update

---
 topics/data/precompute/steps.gmi | 15 +++++++++++++--
 1 file changed, 13 insertions(+), 2 deletions(-)

(limited to 'topics/data')

diff --git a/topics/data/precompute/steps.gmi b/topics/data/precompute/steps.gmi
index a771e2c..d22778a 100644
--- a/topics/data/precompute/steps.gmi
+++ b/topics/data/precompute/steps.gmi
@@ -13,8 +13,18 @@ We will track precompute steps here. We will have:
 Trait archives will have steps for
 
 * [X] step p1: list-traits-to-compute
-* [+] step p2: gemma-lmm9-loco-output: Compute standard GEMMA lmm9 LOCO vector with gemma-wrapper
-* [ ] step p3: gemma-to-lmdb: create a clean vector
+* [X] step p2: gemma-lmm9-loco-output: Compute standard GEMMA lmm9 LOCO vector with gemma-wrapper
+* [X] step p3: gemma-to-lmdb: create a clean vector
+
+Start precompute
+
+* [ ] Fetch traits on tux04
+* [ ] Set up runner on tux04 and others
+* [ ] Run on Octopus
+
+Work on published data
+
+* [ ] Fetch traits
 
 The DB itself can be updated from these
 
@@ -22,6 +32,7 @@ The DB itself can be updated from these
 
 Later
 
+* [ ] Rqtl2: Compute Rqtl2 vector
 * [ ] bulklmm: Compute bulklmm vector
 
 Interestingly this work coincides with Arun's work on CWL. Rather than trying to write a workflow in bash, we'll use ccwl and accompanying tools to scale up the effort.
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