From 87016ee055fb5151197969b755302d24ee41e80c Mon Sep 17 00:00:00 2001
From: Pjotr Prins
Date: Thu, 20 Jul 2023 14:54:48 +0200
Subject: Meeting notes

---
 topics/biohackathon/GNGSoC2023.gmi | 37 +++++++++++++++++++++++++++++++++++++
 1 file changed, 37 insertions(+)

(limited to 'topics/biohackathon')

diff --git a/topics/biohackathon/GNGSoC2023.gmi b/topics/biohackathon/GNGSoC2023.gmi
index 8fe7310..8df2039 100644
--- a/topics/biohackathon/GNGSoC2023.gmi
+++ b/topics/biohackathon/GNGSoC2023.gmi
@@ -47,6 +47,13 @@ git repo genenetwork-machines, guix-bioinformatics
 * Efraim is doing channels for GN2 and GN3
 * Sarthak will try to run guix-forge
 
+### Week 4
+
+* Arun added channels to CI
+* localhost
+* cgit
+* Efraim: gn2 -> channel; Arun tested
+
 ### More
 
 => https://ci.genenetwork.org/jobs/guix-bioinformatics
@@ -87,6 +94,14 @@ git repo genenetwork3
 
 * Bonface demoes new documentation & code
 
+### Week 4
+
+* Settled on prefixes terms and id
+* Updated man pages
+=> https://github.com/genenetwork/gn-docs/tree/master/rdf-documentation
+* Started work on lmdb+guile:
+=> https://github.com/BonfaceKilz/gn-data-vault
+
 ## LLMs & metadata (RDF)
 
 * lead: Shelby
@@ -116,6 +131,13 @@ git repo genenetwork3
 * Priscilla is working on SLA and document acquisition
 * Hosting GN Q&A
 
+### Week 4
+
+* working on container
+* fetched 1000 publication
+* JSON documentation on references
+
+
 ## API to access data from GN
 
 * lead: Rupert
@@ -154,6 +176,12 @@ git repo gn-docs & genenetwork3 & SPARQL
 
 => https://github.com/genenetwork/gn-docs/blob/master/api/alternative-API-structure.md
 
+### Week 4
+
+* Start working on endpoints
+* R api - reference GN/API
+* synteny
+
 ## Editing data
 
 * lead: Fred
@@ -170,6 +198,11 @@ git repo gn-docs & genenetwork3 & SPARQL
 * Fixing issues
 * Meeting on requirements from Arthur and Zach
 
+### Week 4
+
+* Editing works!
+* Discussed the approval procedure and edit button for everyone
+
 ## Guix parametrization
 
 * lead: Sarthak
@@ -191,6 +224,10 @@ git repo gn-docs & genenetwork3 & SPARQL
 
 * Preparing for BLOG on S-exp
 
+### Week 4
+
+* BLOG in a stage that we discuss naming conventions
+
 ## Links
 
 * Matrix room is GNSoC2023
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