From 545f73daca01c67067cca606bda06da0c40b8cfd Mon Sep 17 00:00:00 2001
From: Pjotr Prins
Date: Thu, 8 May 2025 08:02:29 +0200
Subject: Pjotr tasks

---
 tasks/pjotrp.gmi | 15 ++++++++++++++-
 1 file changed, 14 insertions(+), 1 deletion(-)

(limited to 'tasks')

diff --git a/tasks/pjotrp.gmi b/tasks/pjotrp.gmi
index 5f8a620..5b95ebc 100644
--- a/tasks/pjotrp.gmi
+++ b/tasks/pjotrp.gmi
@@ -49,10 +49,23 @@
 ## Ongoing tasks (current/urgent)
 
 * [ ] ~Felix, Alex, Rahul as friends of UTHSC
-* [ ] Precompute
+* [ ] Precompute with GEMMA
+  + [ ] Store N
+  + [ ] Store significance levels
+  + [ ] Check genotype input data
+  + [ ] Imputation
+  + [ ] Do same with bulkLMM
+  + [ ] Generate lmdb output
+  + [ ] Hook into Xapian
+  + [ ] Hook into correlations
+
 * [ ] Check email setup tux04
 * [ ] jbrowse plugin code - https://genenetwork.trop.in/mm10
 * [+] bulklmm Julia as part of GN3 deployment
+  - precompute & Julia
+=> https://github.com/GregFa/TestSysimage
+   Here the repo with BulkLMMSysimage:
+=> https://github.com/GregFa/BulkLMMSysimage
 => /topics/deploy/julia.gmi
 * [X] Set up stable GeneNetwork server instance with new hardware (see below)
 => /topics/systems/fire-up-genenetwork-system-container.gmi
-- 
cgit v1.2.3