From 177c9541d002e9e12a41800b59234c8b2abb2ac7 Mon Sep 17 00:00:00 2001 From: Munyoki Kilyungi Date: Wed, 13 Dec 2023 18:26:06 +0300 Subject: Add new issue regarding transforming genelist metadata. Signed-off-by: Munyoki Kilyungi --- issues/transform-genelist-to-rdf.gmi | 22 ++++++++++++++++++++++ 1 file changed, 22 insertions(+) create mode 100644 issues/transform-genelist-to-rdf.gmi (limited to 'issues/transform-genelist-to-rdf.gmi') diff --git a/issues/transform-genelist-to-rdf.gmi b/issues/transform-genelist-to-rdf.gmi new file mode 100644 index 0000000..3fac57c --- /dev/null +++ b/issues/transform-genelist-to-rdf.gmi @@ -0,0 +1,22 @@ +# Add GeneList to Metadata + +## Tags + +* assigned: bonfacem +* priority: high +* type: RDF +* keywords: virtuoso + +## Description: + +=> https://www.gene-list.com/about About GeneList + + +The GeneList table in GN fetches metadata about given Genes under Resource Links. + +Example: + +=> https://genenetwork.org/show_trait?trait_id=1460303_at&dataset=HC_M2_0606_P Trait Data and Analysis for 1460303_at + +When dumping data, it's unclear how resources (GeneMANIA, STRING, PANTHER, etc.) become links---they are manually constructed in GN's source code. This transformation is crucial when converting data to RDF. + -- cgit v1.2.3