From b6bddd71a83d3d04153de5b9eea35b4a45c344d7 Mon Sep 17 00:00:00 2001
From: Munyoki Kilyungi
Date: Mon, 26 Jun 2023 19:00:26 +0300
Subject: Close probeset-metadata-upload issue

---
 issues/probeset-metadata-upload.gmi | 9 ++++++++-
 1 file changed, 8 insertions(+), 1 deletion(-)

(limited to 'issues/probeset-metadata-upload.gmi')

diff --git a/issues/probeset-metadata-upload.gmi b/issues/probeset-metadata-upload.gmi
index 4020416..b7ba196 100644
--- a/issues/probeset-metadata-upload.gmi
+++ b/issues/probeset-metadata-upload.gmi
@@ -4,7 +4,7 @@
 
 * assigned: bonfacem
 * type: bug
-* status: open
+* status: closed
 
 Probeset metadata is the only significant metadata that remains to be uploaded.  Uploading using SPARQL'S endpoint (either using CURL or the load-rdf script) doesn't work.  As such, I'll have to work out a different way to upload this metadata.  Here's the current size of the datasets I'm trying to upload:
 
@@ -17,3 +17,10 @@ drwxr-xr-x 9 bonfacem bonfacem  4.0K Jun 15 07:04 ..
 -rw-r--r-- 1 bonfacem bonfacem 1014M Jun 16 08:04 dump-probeset-1.ttl
 -rw-r--r-- 1 bonfacem bonfacem 1009M Jun 16 08:18 dump-probeset-2.ttl
 ```
+
+This has been resolved in:
+
+=> https://github.com/genenetwork/genenetwork-machines/pull/3 Add virtuoso allowed dirs
+=> https://gitlab.com/genenetwork/guix-bioinformatics/-/merge_requests/24 Add dirs-allowed to virtuoso configs
+
+The public-sparql and genenetwork-development containers were re-built to apply the above changes.
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