From b5113dc72a27d2c20432e46c80f8110eb25dbc45 Mon Sep 17 00:00:00 2001
From: GregFa
Date: Tue, 27 Jun 2023 20:58:07 -0500
Subject: added new issues: bulklmm, Pluto notebooks, geno file HSNIH Palmer

---
 issues/fix-genotype-filename-HSNIH-Palmer.gmi | 30 +++++++++++++++++++++++++++
 1 file changed, 30 insertions(+)
 create mode 100644 issues/fix-genotype-filename-HSNIH-Palmer.gmi

(limited to 'issues/fix-genotype-filename-HSNIH-Palmer.gmi')

diff --git a/issues/fix-genotype-filename-HSNIH-Palmer.gmi b/issues/fix-genotype-filename-HSNIH-Palmer.gmi
new file mode 100644
index 0000000..246b230
--- /dev/null
+++ b/issues/fix-genotype-filename-HSNIH-Palmer.gmi
@@ -0,0 +1,30 @@
+## Fix genotype filename HSNIH-Palmer
+
+## Tags
+
+* assigned: pjotrp
+* type: bug fix
+* priority: high
+
+## Description
+
+
+When using the Rest API to get the groups for "rat", it mentions the group HSNIH-Palmer.
+But the REST API to obtain the geno file(http://gn2.genenetwork.org/api/v_pre1/gentotypes/HSNIH-Palmer.geno) failed.
+The file of HSNIF-Palmer has actually a different name from what is expected; we have to use "HSNIH-Palmer_true" instead.
+On GeneNetwork website, the following query does not return results from the search.
+
+Dataset try to access: HSNIH-Palmer
+
+Issues with genotyped data:
+Used this query:
+
+Species: Rat
+
+Group: NIH Heterogeneous Stock (Palmer)
+
+Type: DNA Markers and SNPs
+
+Dataset: HSNIH-Palmer Genotypes
+
+Get Any: *
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