From 2469cd822a91992d8661f6ec33bfe86f0725765c Mon Sep 17 00:00:00 2001
From: Frederick Muriuki Muriithi
Date: Tue, 18 Oct 2022 13:02:58 +0300
Subject: Issues (correlation-missing-file): Update issue

* issues/correlation-missing-file.gmi: Update issue with findings and
  a fix for the issue.
---
 issues/correlation-missing-file.gmi | 18 +++++++++++++++++-
 1 file changed, 17 insertions(+), 1 deletion(-)

(limited to 'issues/correlation-missing-file.gmi')

diff --git a/issues/correlation-missing-file.gmi b/issues/correlation-missing-file.gmi
index 95f4e68..4bf82e5 100644
--- a/issues/correlation-missing-file.gmi
+++ b/issues/correlation-missing-file.gmi
@@ -20,4 +20,20 @@ GeneNetwork tux01:gene:2.11-rc2-gn_20221013-4eb4beafd
     [Errno 2] No such file or directory: '/home/gn2/production/tmp/gn2/gn2/ProbeSetFreezeId_886_EPFL/ETHZ BXD Liver Proteome CD-HFD (Nov19)' (error)
 ```
     
-This obviously has something to do with the sample data files, though not sure what yet. 
+This obviously has something to do with the sample data files, though not sure what yet.
+
+### 2022-10-18
+
+I (fredm) was able to successfully reproduce the issue.
+
+The issue here is that the code
+=> https://github.com/genenetwork/genenetwork2/blob/testing/wqflask/wqflask/correlation/pre_computes.py#L212-L219
+generates the file name does not sanitize the input from the database, leading to issues with the final path.
+
+In this case, the dataset name used to generate the file is (** Note the forward slash **):
+```
+EPFL/ETHZ BXD Liver Proteome CD-HFD (Nov19)
+```
+
+The following commit should fix the issue for most part:
+=> https://github.com/genenetwork/genenetwork2/commit/c8f606b0080a7dd343515c7c2ae830dfeecdf341
-- 
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