From 1125ccac0b8f73d4e8ffcc2d7b2828c0096b115e Mon Sep 17 00:00:00 2001 From: Munyoki Kilyungi Date: Mon, 19 Jun 2023 12:39:19 +0300 Subject: Create new issue on adding genotype files to RDF Signed-off-by: Munyoki Kilyungi --- issues/add-genotype-files-to-rdf.gmi | 14 ++++++++++++++ 1 file changed, 14 insertions(+) create mode 100644 issues/add-genotype-files-to-rdf.gmi (limited to 'issues/add-genotype-files-to-rdf.gmi') diff --git a/issues/add-genotype-files-to-rdf.gmi b/issues/add-genotype-files-to-rdf.gmi new file mode 100644 index 0000000..85ac39c --- /dev/null +++ b/issues/add-genotype-files-to-rdf.gmi @@ -0,0 +1,14 @@ +# Add genotype file paths to RDF + +## Tags +* assigned: bonfacem +* type: bug +* status: open, in progress + +In Penguin2, genotype files are located in: /export/data/genenetwork/genotype_files/genotype. Each genotype files has an identifier to a dataset it refers to: + +``` +@name:B6D2 +``` + +Dump the above metadata in RDF. When we transition fully to an LMDB store, update the RDF node with a pointer to the LMDB store. -- cgit v1.2.3