From d91b59b95c7abe29f9a891bec4caa669e7855db4 Mon Sep 17 00:00:00 2001 From: Pjotr Prins Date: Sat, 25 Sep 2021 12:13:02 +0200 Subject: pairscan --- issues/genenetwork1/gn1-pairscan.gmi | 5 +++++ issues/genenetwork1/gn1-production-system-issues.gmi | 5 ++++- 2 files changed, 9 insertions(+), 1 deletion(-) diff --git a/issues/genenetwork1/gn1-pairscan.gmi b/issues/genenetwork1/gn1-pairscan.gmi index cb9ca49..fea14e9 100644 --- a/issues/genenetwork1/gn1-pairscan.gmi +++ b/issues/genenetwork1/gn1-pairscan.gmi @@ -2,6 +2,7 @@ Pair scan is not working because of an import issue. + ``` Here is the error I get trying to run pair-scan. Traceback (most recent call last): @@ -22,6 +23,10 @@ ImportError: No module named direct # Notes +Where 'direct' is an imported module. Interestingly it looks like we import the wrong one! + +I plugged in the direct.so binary blob and set the LD_LIBRARY_PATH. That gets it running, but we need the source code for the future(!) + Efraim included the module and wrote ``` diff --git a/issues/genenetwork1/gn1-production-system-issues.gmi b/issues/genenetwork1/gn1-production-system-issues.gmi index 604fdb0..0edef5a 100644 --- a/issues/genenetwork1/gn1-production-system-issues.gmi +++ b/issues/genenetwork1/gn1-production-system-issues.gmi @@ -14,7 +14,9 @@ This list does not include stuff that needs to be ported to GN2(!). See the GN2 ## List of outstanding issues (see also E-mail Rob 14 Sep 2021) -* [ ] Fix annotating metadata - until we have GN2 alternative +* [ ] Fix annotating metadata - or do we have GN2 alternative? +=> gn1-slowness.gmi [.] Clean up tmp dirs with CRON +=> gn1-mapping-broken.gmi [ ] Marker regression is broken * [ ] Fix annotation link - appears to be a hard coded redirect * [ ] Enable time machines * [ ] Disable all defunct URLs (needs a script) @@ -23,3 +25,4 @@ This list does not include stuff that needs to be ported to GN2(!). See the GN2 * [X] Disable GN mailing list URL => ./gn1-pairscan.gmi [x] Pairscan not working => ./gn1-network-graph.gmi [X] Fix network graph (it does not display image) +* [ ] Disable all defunct URLs -- cgit v1.2.3