From 851d7ada61e9dacbcf04d57b08e2db85d1f1af69 Mon Sep 17 00:00:00 2001 From: Pjotr Prins Date: Thu, 30 Oct 2025 09:50:04 +0100 Subject: On pangenotypes --- topics/genetics/pangenotypes.gmi | 6 ++++++ 1 file changed, 6 insertions(+) diff --git a/topics/genetics/pangenotypes.gmi b/topics/genetics/pangenotypes.gmi index 9ef1c8e..9b3d534 100644 --- a/topics/genetics/pangenotypes.gmi +++ b/topics/genetics/pangenotypes.gmi @@ -1,5 +1,7 @@ # Pangenotypes +Here we discuss different storage solutions for pangenotypes. + ## GRG format @@ -44,3 +46,7 @@ I did some tests and read the source code. The nice thing is that they have very I would like to take similar ideas and take it to an efficient in-memory graph structure that is easily extensible. RDF is key for extensions (and queries). A fast RDF implementation we are going to try is => https://pyoxigraph.readthedocs.io/en/stable/index.html + +Toshiaki pointed out we should look at qlever instead: + +=> https://github.com/ad-freiburg/qlever -- cgit 1.4.1