From 719dcd00dc8a222809ba20699f59a642a928714a Mon Sep 17 00:00:00 2001
From: Pjotr Prins
Date: Tue, 11 Nov 2025 15:57:23 +0100
Subject: GEMMA MAF filter

---
 topics/genetics/test-pangenome-derived-genotypes.gmi | 1 +
 1 file changed, 1 insertion(+)

diff --git a/topics/genetics/test-pangenome-derived-genotypes.gmi b/topics/genetics/test-pangenome-derived-genotypes.gmi
index b4256bb..c16e240 100644
--- a/topics/genetics/test-pangenome-derived-genotypes.gmi
+++ b/topics/genetics/test-pangenome-derived-genotypes.gmi
@@ -9,6 +9,7 @@ For the BXD we have 23M markers(!) whereof 8M *not* on the reference genome.
 
 # Tasks
 
+* [ ] Check MAF filter - it may be too stringent
 * [ ] Use ravanan/CWL to push to Octopus
 * [ ] Reintroduce nodes that were not annotated for position (Flavia)
 * [ ] GWA plotter
-- 
cgit 1.4.1