From 45997e1dbdc23a3dd53c71d15e907fdc43f754da Mon Sep 17 00:00:00 2001 From: Alexander_Kabui Date: Wed, 19 Jul 2023 23:59:47 +0300 Subject: add issue/gn-data-volt --- issues/gn-volt-genofiles-parsing-integration.gmi | 31 ++++++++++++++++++++++++ 1 file changed, 31 insertions(+) create mode 100644 issues/gn-volt-genofiles-parsing-integration.gmi diff --git a/issues/gn-volt-genofiles-parsing-integration.gmi b/issues/gn-volt-genofiles-parsing-integration.gmi new file mode 100644 index 0000000..8a1be6c --- /dev/null +++ b/issues/gn-volt-genofiles-parsing-integration.gmi @@ -0,0 +1,31 @@ +# rewrite sampledata fetching with genofiles using scheme + +## Tags + +* assigned: alexm, +* type: improvement +* priority: high +* status: in progress + +## Notes + +having identified ways to link genofiles to Dataset +and fetching sample data and case attributes using them +we need to integrate the components intoa fully working module +This is in turn be used to dump data to lmdb +We chose scheme to accomplish the task +See code: + +=> https://github.com/BonfaceKilz/gn-data-vault.git + +### TODOS + +* [x] reading the genofile + +* [] parsing the genofile to obtain the sample names + +* [] query statements fetch sampledata and caseattributes + +* [] add tests + +* [] lmdb dump -- cgit 1.4.1