From 31e076e992ad115b0af46c5cdf03ff6f1dbe9c19 Mon Sep 17 00:00:00 2001 From: Alexander_Kabui Date: Mon, 12 Feb 2024 17:13:57 +0300 Subject: use correct ext for issue:issues/fetch-pubmed-references-to-gnqa --- issues/fetch-pubmed-references-to-gnqa | 32 ------------------------------ issues/fetch-pubmed-references-to-gnqa.gmi | 32 ++++++++++++++++++++++++++++++ 2 files changed, 32 insertions(+), 32 deletions(-) delete mode 100644 issues/fetch-pubmed-references-to-gnqa create mode 100644 issues/fetch-pubmed-references-to-gnqa.gmi diff --git a/issues/fetch-pubmed-references-to-gnqa b/issues/fetch-pubmed-references-to-gnqa deleted file mode 100644 index cebeaaf..0000000 --- a/issues/fetch-pubmed-references-to-gnqa +++ /dev/null @@ -1,32 +0,0 @@ -# Fetch Pubmed data to GNWA - -## Tags - -* assigned: alexm -* keywords: llm, pubmed, api, references -* type: enhancements -* status: in progress - -## Description - -The task is to integrate PubMed references into the GNQA system by querying the PubMed API using GNQA publication titles. Then, display the data as reference information, which will provide users with more valuable details. - - -## Tasks - -* [x] Connect to the PubMed API and perform HTTP requests. - -* [x] Query the API with the publication titles. - -* [] Display the PubMed information as reference information on the GN2 user interface. - -* [] dump the results to a DB - -* [x] If references are not found, perform a lossy search or list the closest three papers. - - -For lossy search, see: -=> https://github.com/pjotrp/bioruby-bioinformatics-impact/blob/master/bin/pubmed2bib.rb - -see link to main issue: -=> https://issues.genenetwork.org/topics/lmms/llm-metadata diff --git a/issues/fetch-pubmed-references-to-gnqa.gmi b/issues/fetch-pubmed-references-to-gnqa.gmi new file mode 100644 index 0000000..cebeaaf --- /dev/null +++ b/issues/fetch-pubmed-references-to-gnqa.gmi @@ -0,0 +1,32 @@ +# Fetch Pubmed data to GNWA + +## Tags + +* assigned: alexm +* keywords: llm, pubmed, api, references +* type: enhancements +* status: in progress + +## Description + +The task is to integrate PubMed references into the GNQA system by querying the PubMed API using GNQA publication titles. Then, display the data as reference information, which will provide users with more valuable details. + + +## Tasks + +* [x] Connect to the PubMed API and perform HTTP requests. + +* [x] Query the API with the publication titles. + +* [] Display the PubMed information as reference information on the GN2 user interface. + +* [] dump the results to a DB + +* [x] If references are not found, perform a lossy search or list the closest three papers. + + +For lossy search, see: +=> https://github.com/pjotrp/bioruby-bioinformatics-impact/blob/master/bin/pubmed2bib.rb + +see link to main issue: +=> https://issues.genenetwork.org/topics/lmms/llm-metadata -- cgit v1.2.3