| Age | Commit message (Expand) | Author |
|---|---|---|
| 2022-08-22 | Add some emphasis | Frederick Muriuki Muriithi |
| 2022-08-22 | Add notes on connecting via TCP ports, rather than Unix Sockets | Frederick Muriuki Muriithi |
| 2022-08-22 | Use ${HOME} for documentation. | Frederick Muriuki Muriithi |
| 2022-08-19 | Documentation: Setup small database | Frederick Muriuki Muriithi |
| 2022-08-19 | Documentation: Setup new user, and their default database. | Frederick Muriuki Muriithi |
| 2022-08-19 | Documentation: Setting up local mariadb server for development. | Frederick Muriuki Muriithi |
| 2022-08-17 | Use pre-formatted text blocks for source code | Frederick Muriuki Muriithi |
| 2022-08-17 | Topic: Queries (On preventing SQL Injection). | Frederick Muriuki Muriithi |
| 2022-08-17 | Installing GN2 on a new machine | Pjotr Prins |
| 2022-07-19 | Rescue quality control issues from topics. | Arun Isaac |
| 2022-07-19 | Rescue testing issue from topics. | Arun Isaac |
| 2022-07-18 | Add 'Annotations' section | Frederick Muriuki Muriithi |
| 2022-07-18 | Add section on Platforms, Groups, Studies and Datasets. | Frederick Muriuki Muriithi |
| 2022-07-06 | Document how to update penguin2 mariadb to the production database.•••* topics/systems/mariadb/mariadb.gmi (Update MariaDB on penguin2 to the latest production database): New section. | Arun Isaac |
| 2022-07-05 | Describe how to extract TS data from a provided dataset•••* topics/data-uploads/datasets.gmi: New file. | BonfaceKilz |
| 2022-07-01 | Rescue issues lost in the topics/systems/mariadb directory. | Arun Isaac |
| 2022-07-01 | Move issues lost inside the topics directory. | Arun Isaac |
| 2022-06-24 | virtuoso: Document first time upload failure with large files.•••* topics/systems/virtuoso.gmi (Loading data into virtuoso): Document first time upload failure with large files. | Arun Isaac |
| 2022-06-22 | genotype-database: Fold long code lines.•••* topics/genotype-database.gmi (Database Layout): Fold long code lines. | Arun Isaac |
| 2022-06-22 | genotype-database: Use '*' as list bullets.•••* topics/genotype-database.gmi [Database layout]: Use '*' as list bullets instead of '-'. | Arun Isaac |
| 2022-06-21 | genotype-database: Document design and database layout.•••* topics/genotype-database.gmi (Database layout): New section. | Arun Isaac |
| 2022-06-21 | genotype-database: Document reading the entire matrix.•••* topics/genotype-database.gmi: Document reading the entire matrix using the genodb.nparray function. | Arun Isaac |
| 2022-06-15 | virtuoso: Document hack to get PID of container shepherd.•••* topics/systems/virtuoso.gmi (Running virtuoso)[Running virtuoso in a guix system container]: Document hack to get PID of container shepherd. | Arun Isaac |
| 2022-06-15 | virtuoso: Use /run/current-system/... path to bash in container.•••* topics/systems/virtuoso.gmi (Running virtuoso)[Running virtuoso in a guix system container]: Use /run/current-system/... path to bash in container. | Arun Isaac |
| 2022-06-15 | virtuoso: Enter all namespaces with `nsenter -a'.•••* topics/systems/virtuoso.gmi (Running virtuoso)[Running virtuoso in a guix system container]: Enter all namespaces with `nsenter -a'. | Arun Isaac |
| 2022-06-14 | topics: virtuoso: Fix wrong grammar | BonfaceKilz |
| 2022-06-14 | topics: virtuoso: Note that conductor interface isn't supported | BonfaceKilz |
| 2022-06-14 | topics: virtuoso: Note that "/dev/sdX" is non-consequential | BonfaceKilz |
| 2022-06-14 | topics: virtuoso: Add extra docs on how to run sparql using web UI•••* topics/systems/virtuoso.gmi (Running SPARQL Queries using isql): Add more detailed section of how to access SPARQL using both the web interface and sqli. | BonfaceKilz |
| 2022-06-14 | topics: virtuoso: Document how to inspect a system-container•••* topics/systems/virtuoso.gmi (Running virtuoso in a guix system container): Demonstrate, using `nsenter`, how one would inspect a system container. | BonfaceKilz |
| 2022-06-14 | topics: virtuoso: Document how to run sparql queries using isql•••* topics/systems/virtuoso.gmi (Running Queries using isql): Document how to use isql to run sparql queries using a guix shell. | BonfaceKilz |
| 2022-06-14 | virtuoso: Remove unnecessary root file system definition.•••* topics/systems/virtuoso.gmi (Running virtuoso): Remove unnecessary root file system definition. | Arun Isaac |
| 2022-06-14 | guix-profiles: Use public path to guix-bioinformatics channel.•••An "Arun-specific path" was accidentally added in an earlier commit. | Arun Isaac |
| 2022-06-14 | topics: Explain use of Guix profiles for development.•••* topics/guix-profiles.gmi: New file. | Arun Isaac |
| 2022-06-09 | topics: genotype-database: Use new functional interface.•••* topics/genotype-database.gmi: Use new functional interface. | Arun Isaac |
| 2022-06-08 | topics: genotype-database: Document reading columns.•••* topics/genotype-database.gmi: Document reading columns in Python. | Arun Isaac |
| 2022-06-07 | topics: virtuoso: Fix misspelling of "Protocol".•••* topics/systems/virtuoso.gmi (Loading data into virtuoso): Fix misspelling of "Protocol" changing "Protocal" to "Protocol". | Arun Isaac |
| 2022-06-03 | topics: Document genotype databases.•••* topics/genotype-database.gmi: New file. | Arun Isaac |
| 2022-05-26 | Move post on debugging with pudb into it's Topics | BonfaceKilz |
| 2022-05-16 | New Issue: Remove extra pcorrs options | Frederick Muriuki Muriithi |
| 2022-05-06 | Added link; minor text edits | Pjotr Prins |
| 2022-05-06 | List developer links.•••* topics/links.gmi: New file. * index.skb: Link to it. | Arun Isaac |
| 2022-05-05 | topics: Move virtuoso passwords documentation.•••* topics/systems/virtuoso.gmi (Virtuoso users and setting their passwords): Rename to ... (Set passwords for virtuoso users): ... this, and move to after "Running virtuoso". | Arun Isaac |
| 2022-05-05 | topics: Simplify virtuoso introduction.•••* topics/systems/virtuoso.gmi: Simplify introduction. | Arun Isaac |
| 2022-05-05 | topics: Document minimal virtuoso configuration.•••* topics/systems/virtuoso.gmi (Running virtuoso): Document manually running virtuoso on the command-line with a minimal configuration. (Virtuoso.ini): Delete section. | Arun Isaac |
| 2022-05-05 | topics: Document RDF validation, virtuoso graph loading and deletion.•••* topics/systems/virtuoso.gmi (Loading data into virtuoso): Document RDF validation, virtuoso graph loading and deletion. | Arun Isaac |
| 2022-04-29 | topics: Fix graph name in virtuoso upload.•••* topics/systems/virtuoso.gmi (SPARQL 1.1 Graph Store HTTP Protocol): Fix graph name. | Arun Isaac |
| 2022-04-29 | topics: Document loading data into virtuoso.•••* topics/systems/virtuoso.gmi (Loading data into virtuoso): Organize into new section. | Arun Isaac |
| 2022-04-29 | topics: Group running virtuoso into section.•••* topics/systems/virtuoso.gmi (Running virtuoso): Group running virtuoso into section. | Arun Isaac |
| 2022-04-29 | topics: Remove blank lines in virtuoso topic.•••* topics/systems/virtuoso.gmi: Remove unnecessary blank lines. | Arun Isaac |
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