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-rw-r--r--issues/gemma/GSL_ERROR_function_value_is_not_finite_in_brent.c-issue210.gmi2
-rw-r--r--issues/gemma/gemma-wrapper-has-incomplete-files.gmi2
2 files changed, 4 insertions, 0 deletions
diff --git a/issues/gemma/GSL_ERROR_function_value_is_not_finite_in_brent.c-issue210.gmi b/issues/gemma/GSL_ERROR_function_value_is_not_finite_in_brent.c-issue210.gmi
index 23ad3e5..fdb6a98 100644
--- a/issues/gemma/GSL_ERROR_function_value_is_not_finite_in_brent.c-issue210.gmi
+++ b/issues/gemma/GSL_ERROR_function_value_is_not_finite_in_brent.c-issue210.gmi
@@ -91,3 +91,5 @@ GSL ERROR: function value is not finite in newton.c at line 88 errno 9
```
@hrwang had a good suggestion to make sure that the output for the SNP is made invalid and to continue processing. Disabling the error handler let GEMMA continue. I added a check for the status flag to make sure output was set to invalid (nan). In the test set 178 out of 72732 SNPs failed.
+
+* closed
diff --git a/issues/gemma/gemma-wrapper-has-incomplete-files.gmi b/issues/gemma/gemma-wrapper-has-incomplete-files.gmi
index d530fb4..185c5d4 100644
--- a/issues/gemma/gemma-wrapper-has-incomplete-files.gmi
+++ b/issues/gemma/gemma-wrapper-has-incomplete-files.gmi
@@ -40,3 +40,5 @@ One solution is to write a lock file using the inputs as a hash. The lock file c
I added the same code to replace sheepdog locks. Sheepdog is running every minute on our machines so it is a great test case.
=> https://github.com/pjotrp/deploy/commit/4790b81ee897c8244280169edb3cac751eb0a9b3 sheepdog locking
+
+* closed