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| -rw-r--r-- | issues/variant-browser-using-mm9.gmi | 26 |
1 files changed, 26 insertions, 0 deletions
diff --git a/issues/variant-browser-using-mm9.gmi b/issues/variant-browser-using-mm9.gmi new file mode 100644 index 0000000..66daf10 --- /dev/null +++ b/issues/variant-browser-using-mm9.gmi @@ -0,0 +1,26 @@ +# Variant Browser seems to be using mm9 + +## Tags + +* assigned: +* priority: unclear +* type: bug +* status: stalled +* keywords: variant browser, mm9, from github + +## Members + +* acenteno +* robw +* pjotrp + +## Description + +=> https://github.com/genenetwork/genenetwork2/issues/581 From GitHub + +When looking for SNPs in GN2, the gene annotations (and, I think, the SNPs) of the results do not match the query. +Searching for a gene gives correct coordinates in the search box at http://www.genenetwork.org/snp_browser, but the results are for the same coordinates in mm9 (see screenshot). + +The example is for a search for 'Snx6' (chr12 54.746356 - 54.795662). + +=> https://user-images.githubusercontent.com/35666678/119680694-b6906480-be41-11eb-9070-9f4c2dffb499.png Screenshot |