The study included 187 mice (12~18 month) from B6, D2, D2-Gpmnb, B6D2F1, D2B6F1, and 87 advanced intercross BXD strains (about 2 mice per strain). All procedures were approved by the UTHSC Institutional Animal Care and Use Committee.
The table of samples that are finally used for this study.
Index |
RNA ID |
case ID |
DA_corrected_strain |
Corrected Sex |
AgeAtDeath days |
Tissue |
1 |
E18 |
050115.16 |
BXD75 |
Female |
460 |
Eyeball |
2 |
E19 |
050115.17 |
BXD75 |
Female |
460 |
Eyeball |
3 |
E21 |
042715.10 |
D2B6F1 |
Female |
500 |
Eyeball |
4 |
E22 |
050115.19 |
BXD79 |
Female |
468 |
Eyeball |
5 |
E31 |
121515.13 |
BXD45 |
Female |
507 |
Eyeball |
6 |
E33 |
012615.10 |
BXD45 |
Female |
384 |
Eyeball |
7 |
E34 |
012615.04 |
BXD62 |
Female |
376 |
Eyeball |
8 |
E40 |
021213.21 |
BXD79 |
Female |
378 |
Eyeball |
9 |
E49 |
021213.13 |
BXD60 |
Female |
530 |
Eyeball |
10 |
E60 |
101713.01 |
BXD60 |
Female |
374 |
Eyeball |
11 |
E62 |
090612.07 |
BXD73b |
Female |
377 |
Eyeball |
12 |
E63 |
090612.08 |
BXD73b |
Female |
377 |
Eyeball |
13 |
E65 |
050912.04 |
BXD34 |
Female |
419 |
Eyeball |
14 |
E67 |
42214.08 |
BXD40 |
Female |
362 |
Eyeball |
15 |
E72 |
42214.04 |
BXD24 |
Female |
377 |
Eyeball |
16 |
E75 |
42214.03 |
BXD24 |
Female |
377 |
Eyeball |
17 |
E78 |
42314.1 |
B6D2F1 |
Male |
364 |
Eyeball |
18 |
E82 |
121615.05 |
BXD62 |
Female |
525 |
Eyeball |
19 |
E87 |
101014.10 |
BXD95 |
Female |
536 |
Eyeball |
20 |
E89 |
121615.22 |
BXD89 |
Female |
444 |
Eyeball |
21 |
E90 |
101014.09 |
BXD95 |
Female |
536 |
Eyeball |
22 |
E99 |
121214.15 |
BXD70 |
Female |
357 |
Eyeball |
23 |
E100 |
121214.16 |
BXD70 |
Female |
357 |
Eyeball |
24 |
E124 |
042214.18 |
D2B6F1 |
Male |
397 |
Eyeball |
25 |
E152 |
050912.04 |
BXD48a |
Female |
419 |
Eyeball |
26 |
E158 |
101713.02 |
BXD100 |
Female |
374 |
Eyeball |
27 |
E224 |
021313.26 |
BXD84 |
Female |
385 |
Eyeball |
28 |
E264 |
*050318.12 |
BXD69 |
Male |
387 |
Eyeball |
29 |
E288 |
*110918.106 |
BXD211 |
Male |
404 |
Eyeball |
30 |
E289 |
*110918.105 |
BXD211 |
Female |
404 |
Eyeball |
31 |
E290 |
*100218.04 |
BXD44 |
Female |
530 |
Eyeball |
32 |
E291 |
*100218.05 |
BXD44 |
Male |
530 |
Eyeball |
33 |
E292 |
*100218.18 |
BXD68 |
Female |
516 |
Eyeball |
34 |
E293 |
*100218.20 |
BXD68 |
Male |
516 |
Eyeball |
35 |
E294 |
*100218.36 |
BXD84 |
Female |
516 |
Eyeball |
36 |
E298 |
*100218.73 |
BXD184 |
Female |
512 |
Eyeball |
37 |
E299 |
*100218.74 |
BXD184 |
Male |
512 |
Eyeball |
38 |
E303 |
AGE061218.98 |
BXD177 |
Female |
364 |
Eyeball |
39 |
E304 |
AGE061218.108 |
BXD195 |
Male |
386 |
Eyeball |
40 |
E306 |
AGE061218.107 |
BXD195 |
Female |
386 |
Eyeball |
41 |
E308 |
AGE061218.99 |
BXD177 |
Male |
364 |
Eyeball |
42 |
E310 |
AGE061218.90 |
BXD168 |
Male |
538 |
Eyeball |
43 |
E311 |
AGE061218.85 |
BXD160 |
Male |
390 |
Eyeball |
44 |
E312 |
AGE061218.71 |
BXD150 |
Male |
398 |
Eyeball |
45 |
E313 |
AGE061218.22 |
BXD34 |
Male |
369 |
Eyeball |
46 |
E314 |
AGE061218.21 |
BXD34 |
Female |
369 |
Eyeball |
47 |
E331 |
*110918.07 |
BXD28 |
Male |
366 |
Eyeball |
48 |
E334 |
*110918.02 |
BXD18 |
Male |
452 |
Eyeball |
49 |
E335 |
*110918.01 |
BXD18 |
Female |
452 |
Eyeball |
50 |
E340 |
*110918.51 |
BXD98 |
Male |
359 |
Eyeball |
51 |
E341 |
*110918.50 |
BXD98 |
Female |
359 |
Eyeball |
52 |
E344 |
*083019.05 |
BXD9 |
Female |
373 |
Eyeball |
53 |
E345 |
*083019.06 |
BXD9 |
Male |
373 |
Eyeball |
54 |
E346 |
*083019.22 |
BXD31 |
Male |
391 |
Eyeball |
55 |
E347 |
*083019.23 |
BXD43 |
Female |
391 |
Eyeball |
56 |
E349 |
*083019.26 |
BXD43 |
Male |
367 |
Eyeball |
57 |
E350 |
*083019.30 |
BXD50 |
Female |
408 |
Eyeball |
58 |
E351 |
*083019.31 |
BXD50 |
Female |
408 |
Eyeball |
59 |
E352 |
*083019.33 |
BXD51 |
Female |
368 |
Eyeball |
60 |
E353 |
*083019.34 |
BXD51 |
Male |
368 |
Eyeball |
61 |
E354 |
*083019.38 |
BXD66 |
Male |
430 |
Eyeball |
62 |
E355 |
*083019.39 |
BXD66 |
Male |
430 |
Eyeball |
63 |
E356 |
*083019.45 |
BXD73 |
Female |
451 |
Eyeball |
64 |
E357 |
*083019.46 |
BXD73 |
Male |
451 |
Eyeball |
65 |
E358 |
*083019.48 |
BXD75 |
Female |
369 |
Eyeball |
66 |
E359 |
*083019.49 |
BXD75 |
Male |
369 |
Eyeball |
67 |
E360 |
*083019.50 |
BXD78 |
Female |
432 |
Eyeball |
68 |
E361 |
*083019.51 |
BXD78 |
Male |
432 |
Eyeball |
69 |
E363 |
*083019.55 |
BXD87 |
Female |
444 |
Eyeball |
70 |
E364 |
*083019.56 |
BXD87 |
Male |
444 |
Eyeball |
71 |
E365 |
*083019.57 |
BXD89 |
Female |
446 |
Eyeball |
72 |
E366 |
*083019.66 |
BXD113 |
Female |
366 |
Eyeball |
73 |
E367 |
*083019.67 |
BXD113 |
Male |
366 |
Eyeball |
74 |
E368 |
*090119.04 |
BXD123 |
Female |
441 |
Eyeball |
75 |
E369 |
*090119.05 |
BXD123 |
Male |
441 |
Eyeball |
76 |
E370 |
*090119.09 |
BXD141 |
Female |
370 |
Eyeball |
77 |
E371 |
*090119.11 |
BXD141 |
Male |
370 |
Eyeball |
78 |
E372 |
*090119.15 |
BXD151 |
Female |
439 |
Eyeball |
79 |
E373 |
*090119.16 |
BXD151 |
Male |
439 |
Eyeball |
80 |
E374 |
*090119.18 |
BXD152 |
Female |
374 |
Eyeball |
81 |
E375 |
*090119.19 |
BXD152 |
Male |
374 |
Eyeball |
82 |
E376 |
*090119.20 |
BXD154 |
Female |
370 |
Eyeball |
83 |
E377 |
*090119.22 |
BXD154 |
Male |
370 |
Eyeball |
84 |
E378 |
*090119.24 |
BXD155 |
Female |
379 |
Eyeball |
85 |
E379 |
*090119.25 |
BXD155 |
Male |
379 |
Eyeball |
86 |
E380 |
*090119.27 |
BXD161 |
Female |
376 |
Eyeball |
87 |
E381 |
*090119.28 |
BXD161 |
Male |
376 |
Eyeball |
88 |
E382 |
*090119.34 |
BXD170 |
Male |
438 |
Eyeball |
89 |
E383 |
*090119.36 |
BXD171 |
Female |
370 |
Eyeball |
90 |
E384 |
*090119.37 |
BXD171 |
Male |
370 |
Eyeball |
91 |
E385 |
*090119.41 |
BXD178 |
Female |
493 |
Eyeball |
92 |
E386 |
*090119.42 |
BXD178 |
Female |
493 |
Eyeball |
93 |
E387 |
*090119.44 |
BXD180 |
Female |
375 |
Eyeball |
94 |
E390 |
*090119.48 |
BXD190 |
Male |
374 |
Eyeball |
95 |
E391 |
*090119.52 |
BXD197 |
Female |
433 |
Eyeball |
96 |
E392 |
*090119.53 |
BXD197 |
Male |
433 |
Eyeball |
97 |
E395 |
*090119.57 |
BXD202 |
Female |
427 |
Eyeball |
98 |
E399 |
*090119.67 |
BXD218 |
Female |
412 |
Eyeball |
99 |
E400 |
*090119.68 |
BXD218 |
Male |
412 |
Eyeball |
100 |
E448 |
*100819.101 |
BXD111 |
Female |
373 |
Eyeball |
101 |
E449 |
*100819.102 |
BXD111 |
Male |
373 |
Eyeball |
102 |
E450 |
*100819.104 |
BXD122 |
Female |
383 |
Eyeball |
103 |
E451 |
*100819.105 |
BXD122 |
Male |
383 |
Eyeball |
104 |
E452 |
*100819.107 |
BXD124 |
Female |
366 |
Eyeball |
105 |
E453 |
*100819.108 |
BXD124 |
Male |
366 |
Eyeball |
106 |
E454 |
*100819.110 |
BXD125 |
Female |
376 |
Eyeball |
107 |
E455 |
*100819.111 |
BXD125 |
Male |
376 |
Eyeball |
108 |
E459 |
*100819.131 |
BXD172 |
Female |
375 |
Eyeball |
109 |
E460 |
*100819.132 |
BXD172 |
Male |
375 |
Eyeball |
110 |
E482 |
*052220.14 |
BXD71 |
Female |
396 |
Eyeball |
111 |
E483 |
*052220.10 |
BXD11 |
Female |
379 |
Eyeball |
112 |
E484 |
*052220.07 |
BXD65 |
Male |
528 |
Eyeball |
113 |
E485 |
*052220.03 |
BXD194 |
Male |
396 |
Eyeball |
114 |
E486 |
*052220.19 |
BXD15 |
Female |
415 |
Eyeball |
115 |
E487 |
*052220.02 |
BXD194 |
Female |
396 |
Eyeball |
116 |
E488 |
*052220.12 |
BXD1 |
Female |
429 |
Eyeball |
117 |
E489 |
*052220.18 |
BXD216 |
Male |
401 |
Eyeball |
118 |
E490 |
*052220.13 |
BXD1 |
Male |
429 |
Eyeball |
119 |
E494 |
*052220.15 |
BXD71 |
Male |
396 |
Eyeball |
120 |
E496 |
*052220.08 |
BXD170 |
Male |
360 |
Eyeball |
121 |
E498 |
*052220.06 |
BXD65 |
Female |
528 |
Eyeball |
122 |
E499 |
*052220.05 |
C57BL/6J |
Male |
424 |
Eyeball |
123 |
E501 |
*052220.21 |
BXD73a |
Female |
408 |
Eyeball |
124 |
E502 |
*052220.11 |
BXD11 |
Male |
379 |
Eyeball |
125 |
E503 |
*052220.22 |
DBA/2J-Gpnmb |
Female |
439 |
Eyeball |
126 |
E504 |
*052220.20 |
BXD15 |
Male |
415 |
Eyeball |
127 |
E541 |
042915.08 |
BXD29 |
Female |
478 |
Eyeball |
128 |
E542 |
050115.01 |
BXD65b |
Female |
415 |
Eyeball |
129 |
E543 |
042915.07 |
BXD29 |
Female |
431 |
Eyeball |
130 |
E544 |
042314.12 |
B6D2F1 |
Female |
364 |
Eyeball |
131 |
E548 |
*061119.02 |
C57BL/6J |
Female |
392 |
Eyeball |
132 |
E549 |
*061119.03 |
C57BL/6J |
Male |
392 |
Eyeball |
133 |
E551 |
*061119.11 |
DBA/2J |
Female |
392 |
Eyeball |
134 |
E552 |
*061119.12 |
DBA/2J |
Male |
392 |
Eyeball |
135 |
E554 |
*061119.15 |
DBA/2J |
Male |
392 |
Eyeball |
136 |
E556 |
*061119.22 |
DBA/2J |
Male |
380 |
Eyeball |
137 |
E561 |
*061219.12 |
BXD27 |
Female |
494 |
Eyeball |
138 |
E564 |
*061219.14 |
BXD27 |
Male |
494 |
Eyeball |
139 |
E565 |
*060419.04 |
BXD32 |
Female |
425 |
Eyeball |
140 |
E566 |
*060419.05 |
BXD32 |
Male |
425 |
Eyeball |
141 |
E567 |
*070919.01 |
BXD86 |
Female |
381 |
Eyeball |
142 |
E569 |
*070919.03 |
BXD86 |
Male |
381 |
Eyeball |
143 |
E576 |
*072519.11 |
BXD191 |
Male |
477 |
Eyeball |
144 |
E577 |
*072519.09 |
BXD190 |
Male |
434 |
Eyeball |
145 |
E582 |
*073019.16 |
BXD216 |
Male |
459 |
Eyeball |
146 |
E591 |
*061319.04 |
BXD48 |
Female |
425 |
Eyeball |
147 |
E592 |
*061319.05 |
BXD48 |
Male |
425 |
Eyeball |
148 |
E593 |
*061319.21 |
BXD61 |
Male |
459 |
Eyeball |
149 |
E600 |
*050318.10 |
BXD69 |
Female |
387 |
Eyeball |
150 |
E601 |
*013020.53 |
BXD102 |
Male |
416 |
Eyeball |
151 |
E603 |
*013020.25 |
BXD65b |
Male |
505 |
Eyeball |
152 |
E605 |
*013020.54 |
BXD102 |
Female |
416 |
Eyeball |
153 |
E620 |
*012420.26 |
BXD128a |
Male |
366 |
Eyeball |
154 |
E625 |
*110918.54 |
BXD101 |
Male |
361 |
Eyeball |
155 |
E626 |
*110918.53 |
BXD101 |
Female |
361 |
Eyeball |
156 |
E631 |
*083019.14 |
BXD16 |
Female |
363 |
Eyeball |
157 |
E635 |
*083019.35 |
BXD61 |
Male |
364 |
Eyeball |
158 |
E638 |
*083019.60 |
BXD90 |
Female |
378 |
Eyeball |
159 |
E639 |
*083019.62 |
BXD90 |
Male |
378 |
Eyeball |
160 |
E662 |
*100819.153 |
BXD202 |
Male |
410 |
Eyeball |
161 |
E663 |
*100819.157 |
BXD205 |
Female |
371 |
Eyeball |
162 |
E664 |
*100819.158 |
BXD205 |
Male |
372 |
Eyeball |
163 |
E665 |
*100819.163 |
BXD213 |
Female |
396 |
Eyeball |
164 |
E666 |
*100819.164 |
BXD213 |
Male |
397 |
Eyeball |
165 |
E667 |
*100819.168 |
BXD223 |
Female |
419 |
Eyeball |
166 |
E668 |
*100819.169 |
BXD223 |
Male |
420 |
Eyeball |
167 |
E672 |
*052920.10 |
BXD83 |
Male |
380 |
Eyeball |
168 |
E675 |
*052920.13 |
DBA/2J-Gpnmb |
Female |
452 |
Eyeball |
169 |
E679 |
*052920.12 |
DBA/2J-Gpnmb |
Female |
458 |
Eyeball |
170 |
E680 |
*052920.01 |
BXD43 |
Female |
465 |
Eyeball |
171 |
E682 |
*052920.02 |
C57BL/6J |
Female |
433 |
Eyeball |
172 |
E685 |
*052920.09 |
BXD83 |
Female |
379 |
Eyeball |
173 |
E699 |
*072120.14 |
BXD40 |
Male |
458 |
Eyeball |
174 |
E709 |
*072120.24 |
BXD150 |
Female |
433 |
Eyeball |
175 |
E712 |
*072120.27 |
BXD160 |
Female |
367 |
Eyeball |
176 |
E726 |
*072120.41 |
BXD16 |
Female |
367 |
Eyeball |
177 |
E733 |
*072120.48 |
BXD60 |
Female |
558 |
Eyeball |
178 |
E735 |
*072120.50 |
BXD180 |
Male |
473 |
Eyeball |
179 |
E738 |
*072120.53 |
BXD128a |
Female |
387 |
Eyeball |
180 |
E745 |
*072120.60 |
BXD199 |
Female |
457 |
Eyeball |
181 |
E746 |
*072120.61 |
BXD199 |
Male |
457 |
Eyeball |
182 |
E749 |
*072120.64 |
BXD2 |
Female |
399 |
Eyeball |
183 |
E750 |
*072120.65 |
BXD2 |
Male |
399 |
Eyeball |
184 |
E753 |
*072120.68 |
BXD169 |
Female |
441 |
Eyeball |
185 |
E754 |
*072120.69 |
BXD169 |
Male |
441 |
Eyeball |
186 |
E759 |
*072120.72 |
BXD187 |
Female |
354 |
Eyeball |
187 |
E760 |
*072120.73 |
BXD187 |
Male |
354 |
Eyeball |