Hippocampus 5 Conditions
Illumina Rank Invariant Normalized; Log2 Transformed and Z-Scored
Batch and Outlier Analysis on Partek Genomic Suite 6.6
ANOVA Done with batch (BATCH 1 AND 2); Batch effect removed
K MOZHUI (KMOZHUI@UTHSC.EDU) 12-Nov-12
Outliers removed are: 4060001003_A, 4060001010_D, 4060001012_A, 4060001012_C, 4060001012_E, AND 4060001078_A
Number of samples = 284
Number of probes = 46643

1. UTHSC Hippocampus Illumina v6.1 5Trt (Nov12) RankInv LRS=(46 999)-> 1331
   ProbeSetID:ILM3440048 Gene:Cdkl2 Max LRS=192
2. UTHSC Hippocampus Illumina v6.1 NON (Nov12) RankInv LRS=(46 999)-> 219
   ProbeSetID:ILM6350725 Gene:C14orf119 Max LRS=97.8
3. UTHSC Hippocampus Illumina v6.1 NOS (Nov12) RankInv LRS=(46 999)-> 404
   ProbeSetID:ILM3440048 Gene:Cdkl2 Max LRS=106.6
4. UTHSC Hippocampus Illumina v6.1 NOE (Nov12) RankInv LRS=(46 999)-> 509
   ProbeSetID:ILM5270066 Gene:MGC67181 Max LRS=151
5. UTHSC Hippocampus Illumina v6.1 RSS (Nov12) RankInv LRS=(46 999)-> 415
   ProbeSetID:ILM5720687 Gene:Abhd16a Max LRS=121.7
6. UTHSC Hippocampus Illumina v6.1 RSE (Nov12) RankInv LRS=(46 999)-> 421
   ProbeSetID:ILM6350725 Gene:C14orf119 Max LRS=144.1