QC Results: This data set consists of expression data for 33 strains. A total of 166 probe sets are associated with LOD scores above 10 and the highest linkage score of 22 for Rpl3 (probe set 10430669). Strain distribution patterns of eQTLs with a Mendelian expression pattern match those of their closest markers perfectly, verifying that there are no errors of strain assignment in this data set.

Analysis of XIST probe set 1060617 confirms that most strains are purely female. However, only males were available for BXD1 and BXD6. BXD28 and BXD33 data are based on the average of two female samples and one male sample. All other strains are purely female.

Data were analyzed by Rabea Hall and Dr. Frank Lammert at the Universitätsklinikum des Saarlandes in Homburg, Germany.

Contacts: rabea.hall at uks.eu, Rabea.Hall at uniklinikum-saarland.de, and frank.lammert at uks.eu

Table updated 7-19-2011

Index Sample ID Strain ID Treatment 1 504 B6D2F1 CCl4 2 506 B6D2F1 CCl4 3 508 B6D2F1 CCl4 4 414 C57BL/6J CCl4 5 488 C57BL/6J CCl4 6 489 C57BL/6J CCl4 7 B6J1 C57BL/6J untreated control 8 B6J2 C57BL/6J untreated control 9 B6J3 C57BL/6J untreated control 10 449 DBA/2J CCl4 11 450 DBA/2J CCl4 12 451 DBA/2J CCl4 13 219.1 DBA/2J untreated control 14 219.2 DBA/2J untreated control 15 219.3 DBA/2J untreated control 16 276 BXD1 CCl4 17 278 BXD1 CCl4 18 279 BXD1 CCl4 19 353 BXD2 CCl4 20 357 BXD2 CCl4 21 358 BXD2 CCl4 22 272 BXD6 CCl4 23 273 BXD6 CCl4 24 274 BXD6 CCl4 25 405 BXD11 CCl4 26 406 BXD11 CCl4 27 408 BXD11 CCl4 28 239 BXD12 CCl4 29 240 BXD12 CCl4 30 241 BXD12 CCl4 31 553 BXD13 CCl4 32 554 BXD13 CCl4 33 555 BXD13 CCl4 34 249 BXD14 CCl4 35 250 BXD14 CCl4 36 288 BXD14 CCl4 37 191 BXD19 CCl4 38 644 BXD19 CCl4 39 645 BXD19 CCl4 40 442 BXD24a CCl4 41 443 BXD24a CCl4 42 444 BXD24a CCl4 43 216 BXD27 CCl4 44 218 BXD27 CCl4 45 290 BXD27 CCl4 46 28 BXD28 CCl4 47 71 BXD28 CCl4 48 129 BXD28 CCl4 49 219 BXD31 CCl4 50 220 BXD31 CCl4 51 231 BXD31 CCl4 52 549 BXD32 CCl4 53 550 BXD32 CCl4 54 551 BXD32 CCl4 55 139 BXD33 CCl4 56 140 BXD33 CCl4 57 559 BXD33 CCl4 58 132 BXD34 CCl4 59 146 BXD34 CCl4 60 147 BXD34 CCl4 61 293 BXD39 CCl4 62 597 BXD39 CCl4 63 599 BXD39 CCl4 64 154 BXD40 CCl4 65 570 BXD40 CCl4 66 572 BXD40 CCl4 67 361 BXD42 CCl4 68 362 BXD42 CCl4 69 373 BXD42 CCl4 70 428 BXD43 CCl4 71 429 BXD43 CCl4 72 556 BXD43 CCl4 73 472 BXD51 CCl4 74 473 BXD51 CCl4 75 474 BXD51 CCl4 76 533 BXD55 CCl4 77 534 BXD55 CCl4 78 535 BXD55 CCl4 79 519 BXD62 CCl4 80 520 BXD62 CCl4 81 521 BXD62 CCl4 82 463 BXD65 CCl4 83 464 BXD65 CCl4 84 465 BXD65 CCl4 85 327 BXD69 CCl4 86 346 BXD69 CCl4 87 347 BXD69 CCl4 88 614 BXD73 CCl4 89 616 BXD73 CCl4 90 619 BXD73 CCl4 91 395 BXD75 CCl4 92 482 BXD75 CCl4 93 483 BXD75 CCl4 94 317 BXD87 CCl4 95 319 BXD87 CCl4 96 322 BXD87 CCl4 97 374 BXD90 CCl4 98 388 BXD90 CCl4 99 389 BXD90 CCl4 100 402 BXD96 CCl4 101 403 BXD96 CCl4 102 404 BXD96 CCl4 103 584 BXD98 CCl4 104 585 BXD98 CCl4 105 607 BXD98 CCl4