For dataset HZI PR8M-Infected Lungs Females RNAseq (Oct14) RPKM Log2 we took the RPKM values, added 1 and then log2.

For dataset HZI PR8M-Infected Lungs Females RNAseq (Oct14) RPKM Log2 Treatment we took the RPKM values, added 1 and then log2 and threshold values at average of less than 1 = 0