HFD strain assignment errors to be fixed March 2019
original rma normalization CD + HFD combined
David Ashbrook analyzed strain assignment errors in March 2019. "I've more than doubled the number of markers up to 33, and can be pretty confident that a number of strains are labelled incorrectly, and what strains they should be. I've included a '?' if I'm not confident, or if I couldn't find a good match."
BXD100?
BXD51 > BXD55
BXD55 > BXD51
BXD63 > BXD43
BXD73 > BXD79?
BXD73a > BXD83
BXD75 > BXD73a
BXD79 > BXD81
BXD81 > BXD84
BXD83 > BXD85
BXD84 > BXD87
BXD85? > BXD89
BXD87 > BXD90?
BXD89 > BXD95
BXD90 > BXD73
BXD95 > BXD75
I will try and add a few more markers to try and clear up the last few, but this hopefully gives you an idea of the extent of the problem. It also agrees with the strains that Rob highlighted as potential outliers in his e-mail.
Best,
David
David Ashbrook, PhD
Postdoctoral Fellow
Department of Genetics, Genomics and Informatics
Translational Science Research Building, Room 415
University of Tennessee Health Science Center
71 S Manassas St
Memphis, TN, 38103